BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3736.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313126|ref|YP_003777218.1| geranyltranstransferase [Herbas...   500   e-143
gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase ...   109   3e-25

>gi|300313126|ref|YP_003777218.1| geranyltranstransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  500 bits (1288), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/300 (87%), Positives = 280/300 (93%)

Query: 16  FADWMRQVQGGMEDVLDRFLVPTSKVPARLHQAMRYTAMDGGKRVRPLLVYAAGEVFDTP 75
           FA WM QVQ GME+VL+RFL   S VPARLH+AMRYTAMDGGKRVRPLLVYAAGE+FDTP
Sbjct: 12  FAQWMGQVQSGMEEVLNRFLPSASVVPARLHEAMRYTAMDGGKRVRPLLVYAAGELFDTP 71

Query: 76  PALLDRAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHVQYDEATALLVGDALQAQAF 135
            ALL+RAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVH++YDEATALLVGDALQAQAF
Sbjct: 72  RALLERAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHIRYDEATALLVGDALQAQAF 131

Query: 136 ETLSAPLASEPGLSVADLPARQLRMVQLLAQASGSVGMCGGQAIDLASVGMTLSLAELEQ 195
           +TL+APL SE G + A LPARQLRMV+LLA+A+GSVGMCGGQAIDLASVGMTLSLAELEQ
Sbjct: 132 DTLAAPLESEAGSADAGLPARQLRMVKLLAEAAGSVGMCGGQAIDLASVGMTLSLAELEQ 191

Query: 196 MHRLKTGALLRAAVLLGALGGKDLSADESAALDDYACAIGLAFQVVDDILDATADSATLG 255
           MHRLKTGALLRAAVLLGALGGK L+A ESAALDDYA AIGLAFQVVDDILDATADSATLG
Sbjct: 192 MHRLKTGALLRAAVLLGALGGKALTAAESAALDDYARAIGLAFQVVDDILDATADSATLG 251

Query: 256 KTAGKDAADNKPTYVSILGLAQSQALADKLRATAHAALAPFGQKARRLRELADLIVQRKT 315
           KTAGKDAADNKPTYVSILGLA+SQALA +L+A AH ALAPFG KARRLRELADLIVQRKT
Sbjct: 252 KTAGKDAADNKPTYVSILGLAESQALAGRLQADAHEALAPFGGKARRLRELADLIVQRKT 311


>gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 23/232 (9%)

Query: 39  SKVPARLHQAMRYTAMDGGKRVRPLLVYAAGEVFDTPPALLDRAAAAVEMIHVYSLVHDD 98
           S+VP  ++Q   Y    GGKR+RP+LV      F          AA +E IH  +L+HDD
Sbjct: 14  SEVPL-VNQVAEYIISAGGKRLRPVLVVLIANAFGYKGEHHHSLAAVIEFIHTATLLHDD 72

Query: 99  MPCMDDDALRRGKPTVHVQYDEATALLVGDALQAQAFETLSAPLASEPGLSVADLPARQL 158
           +  +D+ +LRRGK T +  +  A ++LVGD L ++AF+ + A     P            
Sbjct: 73  V--VDESSLRRGKQTANAMFGNAASVLVGDFLYSRAFQMMVA--VGNP------------ 116

Query: 159 RMVQLLAQASGSVGMCGGQAIDLASV-GMTLSLAELEQMHRLKTGALLRAAVLLGAL-GG 216
           R+++++A A+  +    G+ + L ++    +      Q+ R KT  L  AA  +GAL  G
Sbjct: 117 RVMEIVADATNVI--AEGEVLQLLNMHNPDVDENGYLQVIRSKTAKLFEAASQIGALIAG 174

Query: 217 KDLSADESAALDDYACAIGLAFQVVDDILDATADSATLGKTAGKDAADNKPT 268
            D +  E+AA  +Y  +IG AFQ++DD+LD + +SA +GK  G D  + KPT
Sbjct: 175 ADEAGIEAAA--EYGRSIGTAFQLIDDVLDYSGNSAEIGKNVGDDLREGKPT 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 917,761
Number of extensions: 37335
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)