BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3735.p (621 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313125|ref|YP_003777217.1| 1-deoxy-D-xylulose 5-phosphate ... 1211 0.0 gi|300310438|ref|YP_003774530.1| transketolase, C-terminal subun... 129 7e-31 gi|300309646|ref|YP_003773738.1| transketolase C-terminal subuni... 74 4e-14 >gi|300313125|ref|YP_003777217.1| 1-deoxy-D-xylulose 5-phosphate synthase [Herbaspirillum seropedicae SmR1] Length = 621 Score = 1211 bits (3133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 595/621 (95%), Positives = 612/621 (98%) Query: 1 MLLTTINDPADLRRLTRHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFN 60 MLL TINDPADLRRL+RHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFN Sbjct: 1 MLLNTINDPADLRRLSRHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFN 60 Query: 61 TPEDRIVWDVGHQTYPHKILTGRRERMATLRQQEGISGFPRRIESQYDTFGTAHSSTSIS 120 TPEDR+VWDVGHQTYPHKILTGRRERM TLRQQEGISGFPRRIESQYDTFGTAHSSTSIS Sbjct: 61 TPEDRVVWDVGHQTYPHKILTGRRERMDTLRQQEGISGFPRRIESQYDTFGTAHSSTSIS 120 Query: 121 AALGMALAAKTQGSERHAIAVIGDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSISP 180 AALGMALAA+TQGS+RHAIAVIGDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSISP Sbjct: 121 AALGMALAARTQGSDRHAIAVIGDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSISP 180 Query: 181 PVGALNRYLARLMSGKFYATARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGFN 240 PVGALNRYLARLMSGKFYA ARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGFN Sbjct: 181 PVGALNRYLARLMSGKFYARARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGFN 240 Query: 241 YIGPIDGHDLDSLIPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSEG 300 YIGPIDGHDLDSL+PTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSEG Sbjct: 241 YIGPIDGHDLDSLVPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSEG 300 Query: 301 IKPSAGGKLTYTQVFGQWLCDMGAADDKLVGITPAMREGSGMVAFEKAFPNRYYDVGIAE 360 IKPSAGGKLTYT+VFG WLCDM AADDKLVGITPAMREGSGMV FEK FPNRYYDVGIAE Sbjct: 301 IKPSAGGKLTYTKVFGDWLCDMAAADDKLVGITPAMREGSGMVDFEKKFPNRYYDVGIAE 360 Query: 361 QHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGADGAT 420 QHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGADGAT Sbjct: 361 QHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGADGAT 420 Query: 421 HAGNYDLAFLRCIPNMVVMAASDENECRQMLSTAYQYPGPAAVRYPRGAGIGAAVEKTLD 480 HAGNYDLAFLRCIPNMVVMAASDENECR+MLSTAYQYPGPA+VRYPRGAGIGAAV++TL+ Sbjct: 421 HAGNYDLAFLRCIPNMVVMAASDENECRKMLSTAYQYPGPASVRYPRGAGIGAAVDQTLE 480 Query: 481 TLPLGRGEIRRQGKDVAILAFGSLLAPALGAGDKLDATVANMRFIKPLDVELVRQLAASH 540 TLPLGRGEIRRQGK+VAILAFGSLLAP+LGAGDKL+ATVANMRFIKPLDVELV+QLAASH Sbjct: 481 TLPLGRGEIRRQGKNVAILAFGSLLAPSLGAGDKLNATVANMRFIKPLDVELVKQLAASH 540 Query: 541 EALVTVEEGCIMGGAGAAVSEALAAAGINKPILHLGLPDRFIDHGDVAQLLAQCGLDADG 600 +ALVTVEEGCIMGGAGAAVSEALAAAGINKPILHLGLPDRFIDHGD AQLLAQCGLDA+G Sbjct: 541 DALVTVEEGCIMGGAGAAVSEALAAAGINKPILHLGLPDRFIDHGDAAQLLAQCGLDANG 600 Query: 601 IAQSIAQRFGKDQPKLVVNNG 621 IA SIAQRFGKDQPKLVVNNG Sbjct: 601 IADSIAQRFGKDQPKLVVNNG 621 >gi|300310438|ref|YP_003774530.1| transketolase, C-terminal subunit [Herbaspirillum seropedicae SmR1] Length = 334 Score = 129 bits (324), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 92/312 (29%), Positives = 150/312 (48%), Gaps = 9/312 (2%) Query: 304 SAGGKLTYTQVFGQWLCDMGAADDKLVGITPAMREGSGMVAFEKAFPNRYYDVGIAEQHA 363 +A G+ FG+ L D A ++VG+T + + + + F+KA+P R++ +G+AEQ Sbjct: 21 AAEGQRVQAAPFGKALVDYAADRPEIVGLTADLAKYTDLHLFQKAYPERFFQMGMAEQLL 80 Query: 364 VTFAAGMACEGMKPVVAIYSTF-LQRAYDQLIHDVALQNLDVTFALDRAGLVGADGATHA 422 + A GMA EG+ P Y+ F +RAYD + +A +NL+V GL G +H Sbjct: 81 MAAAGGMAKEGLVPFATTYAVFATRRAYDFIHQVIAEENLNVKICCALPGLTTGYGPSHQ 140 Query: 423 GNYDLAFLRCIPNMVVMAASDENECRQMLSTAYQYPGPAAVRYPRGAGIGAAVEKTLDTL 482 DLA +R IP M ++ D + Q + + GP +R RG + +++ Sbjct: 141 ATEDLAMMRAIPGMTIVDPCDALDLEQAVPQIAAHQGPVYMRLARG-NVPLVLDEYDYRF 199 Query: 483 PLGRGEIRRQGKDVAILAFGSLLAPALGA-----GDKLDATVANMRFIKPLD-VELVRQL 536 LGR + R G DV I++ G + AL DK+ V + IKP D +V Q+ Sbjct: 200 ELGRAKEIRDGNDVLIISSGFMTMRALEVAKALEADKVSVAVLHCPTIKPFDEATVVAQV 259 Query: 537 AASHEALVTVEEGCIMGGAGAAVSEALAAAGINKPILHL-GLPDRFIDHGDVAQLLAQCG 595 + +V E ++GG G V+ L + L GLPD F+D G + L + G Sbjct: 260 KKKNRLVVVAENHSVVGGLGEIVATTLMRHRVQPAGFQLAGLPDAFLDAGALPTLHDRYG 319 Query: 596 LDADGIAQSIAQ 607 + + + + I + Sbjct: 320 ISCEVLGRRIKE 331 >gi|300309646|ref|YP_003773738.1| transketolase C-terminal subunit [Herbaspirillum seropedicae SmR1] Length = 321 Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 29/279 (10%) Query: 349 FPNRYYDVGIAEQHAVTFAAGMACEGMKPVVAIYSTFL-QRAYDQLIHDVALQNLDVTFA 407 FP+R+ +VGIAEQ+ + +AG+A EG K + F+ R Y+Q+ +AL + Sbjct: 45 FPDRFVNVGIAEQNLINVSAGLALEGYKVFAYAIAPFITMRCYEQVRVSLALLSEVRPMN 104 Query: 408 LDRAGLVGA------DGATHAGNYDLAFLRCIPNMVVMAASDENECRQMLSTAYQYPGPA 461 ++ G VGA G TH D+ +R +PN V++A+D T GP Sbjct: 105 VNLIG-VGAGYSYVVSGPTHQCYEDITLMRALPNFQVLSAADHVTAAAFFDTCSNSMGPK 163 Query: 462 AVRY-----PRGAGIGAAVEKTLDTLPLGRG-EIRRQGKDVAILAFGSLLAPALGAGDKL 515 +R+ P G GA L +G I R+G + ++A G +L AL A + L Sbjct: 164 YLRFDAQVLPVIYGDGAP--------DLAQGFHIHRRGGKIGLVATGYMLHTALQAAEVL 215 Query: 516 DATVANMRFIKPLDV-----ELVRQLAASHEALVTVEEGCI-MGGAGAAVSEALAAAGIN 569 A + I D+ + +++ S+ + T+EEG GG + + E +A G+ Sbjct: 216 AAEGIEVGVIDLFDLARFSADALQETLQSYAGIATLEEGFRGRGGMDSMLFEFIARRGLQ 275 Query: 570 KPILHLGLPDRF-IDHGDVAQLLAQCGLDADGIAQSIAQ 607 +L++G+ + + G +L + G+ + SI + Sbjct: 276 TRMLNIGVDGVYRFELGTRTELHEEVGIGPQAVLTSIRE 314 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,046,353 Number of extensions: 91785 Number of successful extensions: 289 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 286 Number of HSP's successfully gapped: 3 Length of query: 621 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 530 Effective length of database: 1,188,985 Effective search space: 630162050 Effective search space used: 630162050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)