BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3729.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313119|ref|YP_003777211.1| glycolate oxidase iron-sulfur s...   821   0.0  
gi|300313195|ref|YP_003777287.1| oxidoreductase [Herbaspirillum ...    69   7e-13

>gi|300313119|ref|YP_003777211.1| glycolate oxidase iron-sulfur
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/411 (94%), Positives = 405/411 (98%)

Query: 1   MQTNLADFIRNTQAGQEADSILRSCVHCGFCTATCPTYQLLGNELDGPRGRIYLIKQVLE 60
           MQTNLADFIRNTQAGQEADSILRSCVHCGFCTATCPTYQLLG+ELDGPRGRIYLIKQVLE
Sbjct: 1   MQTNLADFIRNTQAGQEADSILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE 60

Query: 61  GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEQQVPRPLGQRLMRTALK 120
           GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVE+QVPRPL QR+MRTALK
Sbjct: 61  GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEEQVPRPLSQRVMRTALK 120

Query: 121 ELVPRKWIFRPAMKAGQLVRPLLPKLLQNKVPLPQQAGAWPTRSHARQMLYLEGCVQPAM 180
           ELVPRKWIFRPAMKAGQ++RPLLPKLLQNKVPLPQ+AGAWPTR+HARQMLYLEGCVQP+M
Sbjct: 121 ELVPRKWIFRPAMKAGQMLRPLLPKLLQNKVPLPQEAGAWPTRTHARQMLYLEGCVQPSM 180

Query: 181 SPNINSATARVLDALGVQLFAPPKAGCCGAIRYHMNDQDGGLDDMRRNIDAWWPYIEGRD 240
           SPNINSATARVLDALGVQLFAPPKAGCCGAIRYHMNDQ+GGL+DMRRNIDAWWPYIEGRD
Sbjct: 181 SPNINSATARVLDALGVQLFAPPKAGCCGAIRYHMNDQEGGLEDMRRNIDAWWPYIEGRD 240

Query: 241 GIRADTIVMNASGCGATVKEYGHLLQHDPAYAEKARRISRMTRDISEILPEFEQELKHLL 300
           GIRADTIVMNASGCG+TVKEYGHLLQHDP YAEKARRIS MTRDISEILPEFE+ LKH L
Sbjct: 241 GIRADTIVMNASGCGSTVKEYGHLLQHDPVYAEKARRISHMTRDISEILPEFEEALKHKL 300

Query: 301 KHFNGKRVAYHPPCTLQHGQQIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPEL 360
           K FNGKRVAYHPPCTLQHGQ+IRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPEL
Sbjct: 301 KDFNGKRVAYHPPCTLQHGQKIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPEL 360

Query: 361 SYRLRDNKINKLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLDSALQ 411
           SYRLRDNKI+KLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLD+ALQ
Sbjct: 361 SYRLRDNKISKLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLDAALQ 411


>gi|300313195|ref|YP_003777287.1| oxidoreductase [Herbaspirillum
            seropedicae SmR1]
          Length = 1333

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 94/439 (21%), Positives = 156/439 (35%), Gaps = 82/439 (18%)

Query: 20   SILRSCVHCGFCTATCPTYQLLGNELDGPRGRIYLIKQVLEGKPATAATQSHL------- 72
            S ++ C+ CG C   C T+    N L  PR +I     ++E       T+  +       
Sbjct: 859  SSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEAFLYEEQTRRGVSIKHWEE 918

Query: 73   -----DRCLTCRNCESTCPSGVQYGRL--------------------------------- 94
                 D C  C  C + CP  + +G +                                 
Sbjct: 919  FEDVADHCTVCHKCVTPCPVDIDFGDVSMNMRNLLRKMGKKSFNAGTNAAMFFLNATDPA 978

Query: 95   -VDIGRKVVEQQVPRPLGQRLMRTALKELVPRKWIFRPAMKAGQLVRPLLPKLLQNKVP- 152
             ++  RKV+ Q   +   QRL    +K+   ++    PA      V+  +   +  K+P 
Sbjct: 979  TINATRKVMTQWGFK--AQRLGNDLMKKFAKKQTQKPPATVGKPPVKEQVIHFINKKMPG 1036

Query: 153  -LPQQAGAW-----------------PTRSHARQMLYLEGCVQPAMSPNINSATARVLDA 194
             LP++                      T +    + Y  GC    +   +  AT  +L  
Sbjct: 1037 NLPKKTARALLDIEDDKIVPIIRNPKTTTADTEAVFYFPGCGSERLFSQVGLATQAMLWN 1096

Query: 195  LGVQLFAPPKAGCCGAIRYHMNDQDGGLDDMRRNIDAWWPYIEGRDGIRADTIVMNASGC 254
            +GVQ   PP   CCG  +    D + G   +  N   +       + +   T+V++   C
Sbjct: 1097 VGVQTVLPPGYLCCGYPQRGTGDFEKGEKIITDNRVLFHRMANTLNYLDIKTVVVSCGTC 1156

Query: 255  GATVKEYGHLLQHDPAYAEKARRISRMTRDISEILPEFEQELKHLLKHFNGKRVAYHPPC 314
               ++ Y           EK     R+  DI E L   E+ +K  L+   G R  YH PC
Sbjct: 1157 YDQLQGYEF---------EKIFPGCRII-DIHEYL--LEKGVK--LEGVTGTRYMYHDPC 1202

Query: 315  TLQHGQQIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPELSYRLRDNKINKLQA 374
                 QQ   K    L    +D Q    +  CCG +GT+ + +P++S ++R  K  +++ 
Sbjct: 1203 HSPMKQQDPLKTVNSL-ITTIDAQKIEKNDRCCGESGTFGVSRPDVSTQVRFRKEEEMRK 1261

Query: 375  TDPDMIVTGNIGCVTHLQS 393
                +   G  G V  L S
Sbjct: 1262 GSDKVRADGFTGDVKILTS 1280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,317,792
Number of extensions: 56205
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 2
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)