BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3714.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313097|ref|YP_003777189.1| enzyme with a TIM-barrel fold p...   377   e-106
gi|300309842|ref|YP_003773934.1| enzyme with a TIM-barrel fold p...   148   3e-37

>gi|300313097|ref|YP_003777189.1| enzyme with a TIM-barrel fold
           protein [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  377 bits (967), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/233 (82%), Positives = 206/233 (88%)

Query: 1   MSSIAQRLQLVQQQIARATQEAGRASASVQLLAVSKTFGPQAVAEAVQAGQRAFGENYLQ 60
           MSSIAQ LQ VQQQIA A + AGR + +VQLLAVSKTFGPQAV EAV+AGQRAFGENYLQ
Sbjct: 1   MSSIAQNLQHVQQQIAAAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQ 60

Query: 61  EALDKIAAMPSLVPGIALEWHFIGPIQSNKTRPIAEHFAWVHSVDRLKIAQRLSEQRPAE 120
           EAL+KIAA+P L P + L+WHFIGPIQSNKTRPIAEHF WVHSVDRLKIAQRLSEQRPA 
Sbjct: 61  EALEKIAALPLLAPDVPLQWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPAA 120

Query: 121 LGPLNICLQVNISGEASKSGLSPQELPAVAAQVAQLPHLRLRGLMAIPAPSENPAQQRAA 180
           LG LN+CLQVNISGE SKSGL P ELPAVAAQVAQLP L+LRGLMAIPAPSE+  QQRAA
Sbjct: 121 LGALNVCLQVNISGEDSKSGLDPAELPAVAAQVAQLPGLKLRGLMAIPAPSEDVTQQRAA 180

Query: 181 FAAVRGLYEQLRQSGLPLDTLSMGMSADLEAALAEGASIVRIGSAIFGARHYA 233
           FAAVR L  QL+  GL LDTLSMGMSADL+AA+AEGASIVRIGSAIFGARHYA
Sbjct: 181 FAAVRSLLAQLQAQGLALDTLSMGMSADLDAAVAEGASIVRIGSAIFGARHYA 233


>gi|300309842|ref|YP_003773934.1| enzyme with a TIM-barrel fold
           protein [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  148 bits (374), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 138/233 (59%), Gaps = 11/233 (4%)

Query: 8   LQLVQQQIARATQEAGRASASVQLLAVSKTFGPQAVAEAVQAGQRAFGENYLQEALDKIA 67
           L  V ++IA A + AGR ++SV+LL VSKT    ++  A  AG    GEN  QEA  K  
Sbjct: 35  LAAVHRRIAAACERAGRPASSVRLLPVSKTKPESSIRLAYAAGCCLLGENKPQEACHKWE 94

Query: 68  AMPSLVPGIALEWHFIGPIQSNKTRPIAEHFAWVHSVDRLKIAQRLSEQRPAELGPLNIC 127
           A   L     L+W  IG +Q+NK + +A   A   ++D L++AQ L  +   E   L++ 
Sbjct: 95  ATQDLS---GLQWSVIGHLQTNKAKLVARFAAEFQALDSLRVAQALERRLQQEGRGLDVF 151

Query: 128 LQVNISGEASKSGLSPQELPAVAAQVAQLPHLRLRGLMAIPAPSENPAQQRAAFAAVRGL 187
           +QVN SGEASK GL+P+E+     Q+   P LRLRGLM +   S +PA+ R  F+ +R L
Sbjct: 152 VQVNTSGEASKYGLAPEEVAPFLRQLHAYPALRLRGLMTLAVFSPDPARVRPCFSLLRNL 211

Query: 188 YEQLRQS---GLPLDTLSMGMSADLEAALAEGASIVRIGSAIFGAR-----HY 232
            E+LRQ    G  LD LSMGMS D E A+ EGA++VR+G A+FGAR     HY
Sbjct: 212 RERLRQDVPAGAQLDELSMGMSGDYEIAIEEGATVVRVGQALFGARALPDSHY 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 703,573
Number of extensions: 29061
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)