BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3712.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313095|ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillu...   384   e-108
gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein [Her...   190   1e-49
gi|300309506|ref|YP_003773598.1| membrane-bound metallopeptidase...    74   9e-15

>gi|300313095|ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 254

 Score =  384 bits (985), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/234 (85%), Positives = 212/234 (90%), Gaps = 7/234 (2%)

Query: 24  GCAATADNDGYYTVKRGDTLYSIGRDFDQSPANLRTWNRLRNPDDLEVGQRILVRPPVGV 83
           GCA+TAD+DGYYTVKRGDTLYSIGRDFDQSPANLRTWNRLRNPDDLEVGQRILVRPPVGV
Sbjct: 23  GCASTADSDGYYTVKRGDTLYSIGRDFDQSPANLRTWNRLRNPDDLEVGQRILVRPPVGV 82

Query: 84  VARTGAGQSPRPAASSASGTP-----RKSTTRPATKPATKPQDDDDDAPAPADAKLDWMW 138
           VARTGAGQSPRPAASS+         + + +RP  KPA KPQDDD  APA A+AK+DW W
Sbjct: 83  VARTGAGQSPRPAASSSPSASGSGSRKPAPSRPTAKPAAKPQDDD--APAGAEAKVDWSW 140

Query: 139 PTQGKSAPSADSYKKGIDISGSQGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSV 198
           PT GKSAPSADSYKKGIDI GS+GQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSV
Sbjct: 141 PTAGKSAPSADSYKKGIDIIGSEGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSV 200

Query: 199 YAHNDSILVKEGQMVTRGQQIATMGNSDTNKVKLYFEIRRNGKPVNVMALLPAR 252
           YAHN +ILVKEGQ VTRGQQIATMGNSDTNKVKLYFEIRRNGKP+NVMA+LPAR
Sbjct: 201 YAHNKTILVKEGQTVTRGQQIATMGNSDTNKVKLYFEIRRNGKPINVMAVLPAR 254


>gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 332

 Score =  190 bits (482), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 150/279 (53%), Gaps = 61/279 (21%)

Query: 33  GYYTVKRGDTLYSIGRDFDQSPANLRTWNRLRNPDDLEVGQRILVRPP------------ 80
           GYYTVK+GDTLY I  +  Q+  ++  WN L NP+D++V Q + V PP            
Sbjct: 56  GYYTVKKGDTLYRIALEAGQNWRDIVAWNNLTNPNDIKVDQTLRVAPPDRAPGTAQTAAI 115

Query: 81  -----VGVVAR------TGAGQSPRPAASSASGTPRKSTTRPATKPATKPQDDDDDAPAP 129
                 G+  +      T A  +P P  S+ +G PR    RP ++ A    +  D   AP
Sbjct: 116 AASPAAGLEVKPLGAPGTSAPAAPVPVGSNKTG-PR-GDKRPYSESALAELEKPDAPSAP 173

Query: 130 A------------------------------------DAKLDWMWPTQGKSAPSADSYKK 153
           A                                    D  + WMWP +GK   + +  KK
Sbjct: 174 AASGTSVASAAPSAPAKAEQPHAADKPAAAASQAAADDEGVSWMWPAEGKVVGTFEGGKK 233

Query: 154 GIDISGSQGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNDSILVKEGQMV 213
           G+DI+G  GQ+V+AA AGKV YAG GIRGYGN+VIIKHT  LLS YAHN +ILVKEGQ V
Sbjct: 234 GVDIAGKAGQAVLAAGAGKVMYAGSGIRGYGNLVIIKHTSNLLSAYAHNQTILVKEGQSV 293

Query: 214 TRGQQIATMGNSDTNKVKLYFEIRRNGKPVNVMALLPAR 252
           T+GQ+IA MG SD++ VKL+FEIR+ GKPV+    LP R
Sbjct: 294 TKGQKIAEMGKSDSDTVKLHFEIRQQGKPVDPSKYLPPR 332


>gi|300309506|ref|YP_003773598.1| membrane-bound metallopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score = 74.3 bits (181), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 2/93 (2%)

Query: 153 KGIDISGSQGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNDSILVKEGQM 212
           +G+ I   +G  V A AAG+V +A   +RG+GN++I+ H  Q +++Y +N S+L + G +
Sbjct: 371 RGLFIRAHEGAEVRAVAAGRVVFA-DWLRGFGNLIIVDHGNQYMTIYGNNQSVLKRAGDL 429

Query: 213 VTRGQQIATMGNSDTNKVK-LYFEIRRNGKPVN 244
           V  G  IAT GNS  N+   LYFE+R  G+  +
Sbjct: 430 VKAGDTIATAGNSGGNEQSGLYFEMRYQGRAFD 462


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 693,376
Number of extensions: 26250
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 5
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)