BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3703.p (364 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 691 0.0 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 361 e-101 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 354 6e-99 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 335 3e-93 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 317 7e-88 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/364 (93%), Positives = 349/364 (95%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MAAIHLKQVRKTYGAG KAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEE+S Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 SGQIVIG RVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEID RVQR Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 QKLHA+LRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 241 PPMNLLRGKLSADGGSFEVDQGGAADTVRLPQALPAAAGQERILGVRPEHLLPILDGSEA 300 PPMNLL+GKLSADG SFEV +G A+D +RLPQ L AAGQERILGVRPEHLLPILDGS A Sbjct: 241 PPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDGSAA 300 Query: 301 QLALEVELVEALGAELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAADVHWFDVQST 360 QL+LEVELVEALGAELLVHARCGGQ+LVLRCPANV V TGQRIGASFGA DVHWFDV+ST Sbjct: 301 QLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVKST 360 Query: 361 HRIG 364 RIG Sbjct: 361 RRIG 364 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 361 bits (926), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/374 (52%), Positives = 251/374 (67%), Gaps = 35/374 (9%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA++ ++ V+K +G+ +I G+D +IADGEF V+VGPSGCGKSTLLRM+AGLEE++ Sbjct: 1 MASVQIRAVKKQFGS----TQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEIT 56 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 G+I+IG VVN+++PK+RDIAMVFQNYALYPHMTV NMA+ L + K+ +DERV++ Sbjct: 57 GGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKK 116 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA IL L LL+R PRQLSGGQRQRVAMGRAIVR P VFLFDEPLSNLDAKLRVQMR EI Sbjct: 117 AADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEI 176 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 ++LH L+TTS+YVTHDQ+EAMT+ +++VM G+ EQ G P ++Y PA FVA FIGS Sbjct: 177 KELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGS 236 Query: 241 PPMNLLRGKLSADGGSFEVDQGGAADTVRLP----QALPAAAGQERILGVRPEHLLPILD 296 P MN + L + EV+ AD R+P AL GQ+ GVRPEHL Sbjct: 237 PAMNFIPATLRRNATGAEVE---FADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSI--- 290 Query: 297 GSEAQ-LALEVELVEALGAELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAADV--- 352 G+ Q +A +V +VE GA+ V +R G SL ++ R FGA DV Sbjct: 291 GAAGQGIATKVIVVEPTGADTEVFSRFGDTSL----------TSIFRERHDFGAGDVIHL 340 Query: 353 -------HWFDVQS 359 H FD +S Sbjct: 341 VPDHSRTHLFDAES 354 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 354 bits (909), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 195/360 (54%), Positives = 242/360 (67%), Gaps = 6/360 (1%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA +++KQ+RKTY A DV+ G++ +I DGEF V+VGPSGCGKSTLLRM+ GLEE+S Sbjct: 1 MAHVNIKQLRKTYDGRA---DVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEIS 57 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 G++ IG +VVN L P ER IAMVFQ+YALYPHM VY+NMA+GLK+ G SKS+ID R++ Sbjct: 58 GGELAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRH 117 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AAAIL++ LL+R PR+LSGGQRQRVA+GRAIVR+P +FLFDEPLSNLDA LRVQ RLEI Sbjct: 118 AAAILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEI 177 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 KLH L T +YVTHDQVEAMTLG +++VM+ G +Q GTP E+Y +P FVA FIGS Sbjct: 178 AKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGS 237 Query: 241 PPMNLLRGKLS-ADGGSFEVDQGGAADTVRLPQALPAAAGQERILGVRPEHLLPILDGSE 299 P MN +G ++ D +V+ G + L G LG+R E + L G Sbjct: 238 PKMNFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGL-GDG 296 Query: 300 AQLALEVELVEALG-AELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAADVHWFDVQ 358 L V LVE LG A L GG +V+R N V GQ I S + H FD Q Sbjct: 297 QPLHGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFDAQ 356 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 335 bits (859), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 184/366 (50%), Positives = 243/366 (66%), Gaps = 25/366 (6%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MAA+ ++ + K Y +V+ I+ EI DGEF+V VGPSGCGKSTLLRM+AGLEE+S Sbjct: 1 MAAVSIRNLAKRYDDN----EVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEIS 56 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 G + IG R +N++ +R +AMVFQ+YALYPHM++Y NMA+GLKI G SK+EID VQ Sbjct: 57 DGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQH 116 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA IL + LL+R PR LSGGQRQRVA+GRAI R+P+VFLFDEPLSNLDA LRV+MRLE Sbjct: 117 AAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF 176 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 KLH +L+TT +YVTHDQ+EAMTL +++V++ G EQ+G+P ++Y PA FVA FIGS Sbjct: 177 AKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGS 236 Query: 241 PPMNLLRGKLS---ADGGSFEVDQGG----AADTVRLPQALPAAAGQERILGVRPEHLLP 293 P MN + G ++ ADG ++ GG A D L GQ+ LGVRPEH Sbjct: 237 PKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTL------QVGQKVTLGVRPEH--- 287 Query: 294 ILDGSEAQLALEVEL--VEALGAELLVHARCGG--QSLVLRCPANVPVSTGQRIGASFGA 349 L+ ++ Q AL+ +E LG ++A G +L+LR P ++ G + + Sbjct: 288 -LNIAQGQAALQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADP 346 Query: 350 ADVHWF 355 A H F Sbjct: 347 ARCHLF 352 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 317 bits (813), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 182/366 (49%), Positives = 239/366 (65%), Gaps = 14/366 (3%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA IH + + K Y G V+H +D I DGEF+V++GPSGCGKST+LRM+AGLE++S Sbjct: 1 MADIHCQALAKHYAGGPP---VLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDIS 57 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 G + IG VVNDL +ER++AMVFQNYALYPHM+VY N+A+GL+ +EID RV+ Sbjct: 58 GGTLRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVRE 117 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA+L L ALLER PR +SGGQ+QR A+ RAI++ P+VFLFDEPLSNLDAKLR Q+R +I Sbjct: 118 VAALLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDI 177 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 ++LH LRTT++YVTHDQ+EAMTL R+I+M G Q G+PAE+Y P F A FIG+ Sbjct: 178 KRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGT 237 Query: 241 PPMNLLRGKLSADGGSFEVD---QGGAADTVRLPQALPAAAGQERILGVRPEHLLPILDG 297 P MN L G + G ++ Q A R + A A + L VRP+H+ I Sbjct: 238 PAMNFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMAVK---LAVRPDHVR-IAGE 293 Query: 298 SEAQLAL----EVELVEALGAELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAADVH 353 E +L VELVE LGA+ L+ RCG Q+L PA+ G + + ++H Sbjct: 294 REPAASLTCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELH 353 Query: 354 WFDVQS 359 FDV+S Sbjct: 354 VFDVES 359 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,057,375 Number of extensions: 41707 Number of successful extensions: 548 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 355 Number of HSP's successfully gapped: 140 Length of query: 364 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 278 Effective length of database: 1,212,660 Effective search space: 337119480 Effective search space used: 337119480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)