BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3701.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790...   613   e-177
gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359...   130   9e-32

>gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  613 bits (1582), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 297/303 (98%), Positives = 301/303 (99%)

Query: 1   MDKEELVKRVHRELADSYDEEMELELEDRTVDPVTGEFSSAHGNEEKEYRRLYFRELFRL 60
           MDKEELVKRVHRELADSYDEEMELELEDRT+DPVTGEFSSAHG EEKEYRRLYFRELFRL
Sbjct: 2   MDKEELVKRVHRELADSYDEEMELELEDRTIDPVTGEFSSAHGEEEKEYRRLYFRELFRL 61

Query: 61  QGELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERT 120
           QGELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERT
Sbjct: 62  QGELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERT 121

Query: 121 QWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEQYEEFFRSVPEFERMLTRAG 180
           QWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFC+DEQYEEFFRSVPEFERMLTRAG
Sbjct: 122 QWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCSDEQYEEFFRSVPEFERMLTRAG 181

Query: 181 IQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHIP 240
           IQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHIP
Sbjct: 182 IQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHIP 241

Query: 241 EAPWWVVQAVDKKKARLNCIQHLLQQMPYAEVPHPPVILPERERHEDYERHPVPDSMIVP 300
           EAPWWVVQAVDKKKARLNCI HLLQQMPYAEVPHPPV+LPERERHEDYERHPVPDSMIVP
Sbjct: 242 EAPWWVVQAVDKKKARLNCIHHLLQQMPYAEVPHPPVLLPERERHEDYERHPVPDSMIVP 301

Query: 301 EYY 303
           E+Y
Sbjct: 302 EFY 304


>gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  130 bits (328), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 59  RLQGELVKLQDWVVQTGHK--VVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPND 116
           RL G L+ +Q  ++  GHK  V++V +G D +GK G +  +   +NP+  R++    P  
Sbjct: 41  RLSG-LIGVQQQMLYAGHKHKVLVVLQGMDTSGKDGTVNDVFAAVNPQGIRISNFKGPTA 99

Query: 117 RERTQWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCTDEQYEEFFRSVPEFERML 176
            E    Y  R  + +P AGEI +F+RS Y    + RV  +  D++ +  +R + +FERML
Sbjct: 100 IELAHDYLWRVHAQVPVAGEIAVFNRSHYEDVLITRVHDWIDDKECQRRYRQINDFERML 159

Query: 177 TRAGIQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLER 236
              G  V+K++  I+  EQ  R  SRI DP K WK  P DL  R+ W+ Y    + +L  
Sbjct: 160 WETGTVVLKFFLHISKAEQKSRLQSRIDDPNKHWKFDPQDLAERKFWDAYQTRYQEVLRA 219

Query: 237 THIPEAPWWVVQAVDKKKARL---NCIQHLLQQM 267
           T    APW+VV A  K    L   N +   LQ++
Sbjct: 220 TSTLHAPWYVVPADSKTHRNLVVANVVLETLQKL 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 891,368
Number of extensions: 32910
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)