BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3697.p
         (420 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313080|ref|YP_003777172.1| major facilitator superfamily p...   483   e-137

>gi|300313080|ref|YP_003777172.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  483 bits (1243), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 312/398 (78%), Positives = 334/398 (83%), Gaps = 15/398 (3%)

Query: 24  HRWKVLAAGVAANASFSAVFSGIPVTSLVLRSDYHLSNAQLGLALGLLSLGVALGELPWG 83
           HRWKVLAAGVAANASFSAVFSGIPVTS+VLRSDY LSN QLGLALGLLSLGVALGELPWG
Sbjct: 18  HRWKVLAAGVAANASFSAVFSGIPVTSVVLRSDYRLSNTQLGLALGLLSLGVALGELPWG 77

Query: 84  LLTDRLGDRKVLLVGLLGTSVALGLLMLLARPGRGADAAYLWLCGGLMLAGLLGGSVNGA 143
           +LTDR GDRKVLL GLLG S ALGLLML A PG+GA A++ WLC GLMLAGLLGGSVNGA
Sbjct: 78  VLTDRWGDRKVLLAGLLGASAALGLLMLYALPGQGA-ASFAWLCAGLMLAGLLGGSVNGA 136

Query: 144 SGRAIMGWFADGERGLAMSIRQTAVPLGGGIGALLLPLLAAQAGFAAVFGLLMSWCLASV 203
           SGRAIMGWF +GERGLAMSIRQTAVPLGGG+GALLLP LAAQAGF AVF  LM+ CLASV
Sbjct: 137 SGRAIMGWFGEGERGLAMSIRQTAVPLGGGLGALLLPTLAAQAGFGAVFAALMAACLASV 196

Query: 204 GLVLWWLREPPLQ-LH-ARLAATSATPALRNAMVWRLALGIGLLCAPQVALISFGGIFLH 261
           GLVL WLRE P+   H A     +A+ ALR+ +VWRLALGIGLLCAPQVAL+SFGGIFL 
Sbjct: 197 GLVLRWLREAPVAPAHGAAPVVGAASMALRSKLVWRLALGIGLLCAPQVALLSFGGIFLQ 256

Query: 262 EVGQAGLLLISVLLTLVQIGAAITRIASGRWTDRRGQRRDYLRGCALASAILFAALGALS 321
           E  QA +L ISVLLTLVQ+GAA  RIASGRWTDRRGQRRDYLRGCALASA LF  LG   
Sbjct: 257 ESAQASVLAISVLLTLVQLGAAAARIASGRWTDRRGQRRDYLRGCALASAALFGLLGV-- 314

Query: 322 LLSLHAALPWLSLLLVSAGVVVSAWHGVAYTELAVVAGPSQVGTALGLGNSCVFLVFFLT 381
                     L+ LLV+AGVVVSAWHGVAYTELAVVAG  QVGTALGLGNSCVFLVFFL 
Sbjct: 315 ----------LAPLLVAAGVVVSAWHGVAYTELAVVAGAGQVGTALGLGNSCVFLVFFLA 364

Query: 382 AQAVPLLLHWQGWPAVWLGTALVALLVFPLFPALVKPR 419
           AQA+P LLHWQGWPAVWL  A+VALLV+PLFP   + R
Sbjct: 365 AQAIPPLLHWQGWPAVWLAIAVVALLVWPLFPPEDRAR 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 924,290
Number of extensions: 30516
Number of successful extensions: 306
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 5
Length of query: 420
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,203,190
Effective search space: 399459080
Effective search space used: 399459080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)