BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3691.p
         (593 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313073|ref|YP_003777165.1| potassium-transporting ATPase s...  1081   0.0  

>gi|300313073|ref|YP_003777165.1| potassium-transporting ATPase
           subunit A [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score = 1081 bits (2796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/593 (94%), Positives = 577/593 (97%)

Query: 1   MDSNNYYQLGLYLVVLLLLSLPLGWYMARVMEGKSRVNRLFGGIERIFYRISGIDGEQEM 60
           MDSNNYYQLGLYL VLLLLSLPLGWYMARVMEGKSRVNRLFGGIER+FYR+ GI  E EM
Sbjct: 1   MDSNNYYQLGLYLAVLLLLSLPLGWYMARVMEGKSRVNRLFGGIERVFYRLCGISREHEM 60

Query: 61  NWKQYAIAVVLFNFIGVVVVYLLQRVQLWLPLNPQAFANVSPDSSFNTALSFVTNTDWQG 120
           +WKQYAIAVVLFNFIG + VYLLQR+Q WLPLNP A A+VSPDSSFNTALSFVTNT+WQG
Sbjct: 61  DWKQYAIAVVLFNFIGAIAVYLLQRLQQWLPLNPAALASVSPDSSFNTALSFVTNTNWQG 120

Query: 121 YTGEATMSYLTQMAALAVQNFLSAATGIAIAFALIRGFARHSSKGIGNFWVDMTRSILYV 180
           Y GE+TMSYLTQMAALA+QNFLSAATGIAIAFALIRGFARHSSKGIGNFWVDMTRS LYV
Sbjct: 121 YAGESTMSYLTQMAALALQNFLSAATGIAIAFALIRGFARHSSKGIGNFWVDMTRSTLYV 180

Query: 181 LLPLSVVFALVLVQQGSIQNFHAYQDVKTLEVTNYTIPKLDAAGQPLKDAKGEPLTEAQS 240
           LLPLSVV ALVLVQQGSIQNF AYQDVKTLEVT+YT+PKLDAAGQPLKDAKGEP+TEAQS
Sbjct: 181 LLPLSVVLALVLVQQGSIQNFRAYQDVKTLEVTHYTVPKLDAAGQPLKDAKGEPVTEAQS 240

Query: 241 TDKQTLPMGPVASQEAIKMIGTNGGGFFNANSAHPYENPTPLSNFLQMLAILIIPAALCT 300
           TDKQTLPMGPVASQEAIKMIGTNGGGFFNANSAHPYENPTPLSNFLQMLAILIIPAALCT
Sbjct: 241 TDKQTLPMGPVASQEAIKMIGTNGGGFFNANSAHPYENPTPLSNFLQMLAILIIPAALCT 300

Query: 301 SFGVLVGDRRQGWAILASMTLLFVVMTLVLMYSESQPNPMLASLHASGPGMMEGKETRFG 360
           SFGVLVGDRRQGWAILA+MTLLFVVMTLVLMY+ESQPNPMLASLHASGPGMMEGKETRFG
Sbjct: 301 SFGVLVGDRRQGWAILAAMTLLFVVMTLVLMYAESQPNPMLASLHASGPGMMEGKETRFG 360

Query: 361 IPASALFASITTAASCGAVNAMHDSLSPLGGLVPMLQMQLGEVVFGGVGSGLYGMLIFAV 420
           IPASALFASITTAASCGAVNAMHDSLSPLGGLVPMLQMQLGEVVFGGVGSGLYGMLIFAV
Sbjct: 361 IPASALFASITTAASCGAVNAMHDSLSPLGGLVPMLQMQLGEVVFGGVGSGLYGMLIFAV 420

Query: 421 LAVFIAGLMIGRTPEYLGKKIGVFDMKMMSIAILMTPALVLIFTALSVMVEGGLAGIANP 480
           LAVFIAGLMIGRTPEYLGKKIGVFDMKMMSIAILMTPALVLIFTALSVMVE GLAGIANP
Sbjct: 421 LAVFIAGLMIGRTPEYLGKKIGVFDMKMMSIAILMTPALVLIFTALSVMVEAGLAGIANP 480

Query: 481 GAHGFSEILYAFSSAANNNGSAFAGLSANTPYYNITTGLCTWLGRFGIIVPVLAMAGSLA 540
           GAHGFSEILYAFSSAANNNGSAFAGLSANTPYYNITTG+CTWLGRFGIIVPVLAMAGSLA
Sbjct: 481 GAHGFSEILYAFSSAANNNGSAFAGLSANTPYYNITTGICTWLGRFGIIVPVLAMAGSLA 540

Query: 541 AKKRLAATSGTLPTHGPLFVALLIGAVILVGALTYVPALALGPVVEHLQMMAM 593
            KKRLAATSGTLPTHGPLFVALLIGAVILVGALTYVPALALGPVVEHLQMMAM
Sbjct: 541 GKKRLAATSGTLPTHGPLFVALLIGAVILVGALTYVPALALGPVVEHLQMMAM 593


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,653,123
Number of extensions: 65367
Number of successful extensions: 271
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 502
Effective length of database: 1,188,985
Effective search space: 596870470
Effective search space used: 596870470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 133 (55.8 bits)