BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3688.p (940 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313070|ref|YP_003777162.1| two component sensor histidine ... 1660 0.0 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 102 1e-22 gi|300311808|ref|YP_003775900.1| two component sensor histidine ... 102 1e-22 gi|300310697|ref|YP_003774789.1| two component hybrid sensor his... 99 2e-21 gi|300311514|ref|YP_003775606.1| two component sensor histidine ... 94 5e-20 >gi|300313070|ref|YP_003777162.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 939 Score = 1660 bits (4300), Expect = 0.0, Method: Compositional matrix adjust. Identities = 861/934 (92%), Positives = 889/934 (95%) Query: 7 ATGFLPLQCFNSDIPYMNTRPDPDDLLERVMRDEERQARGRLKIFFGFSAGVGKTFAMLE 66 +TG LPLQC N D P M TRPDPDDLLERVMRDEERQARGRLKIFFGFSAGVGKTFAMLE Sbjct: 6 STGLLPLQCSNPDNPDMTTRPDPDDLLERVMRDEERQARGRLKIFFGFSAGVGKTFAMLE 65 Query: 67 AAQALGAQGVDVLAGVVETHGRAETEAQLAGIVRLPMRLVPYRNRQLPEFDLDAALERKP 126 AAQAL AQG DV+AGVVETHGRAETEAQLAG+ RLPMR+V YR+RQLPEFDLDAALERKP Sbjct: 66 AAQALAAQGGDVVAGVVETHGRAETEAQLAGLARLPMRMVAYRDRQLPEFDLDAALERKP 125 Query: 127 GVILVDELAHSNVPGSRHAKRWQDIDELLRAGIDVYTTLNVQHIESLNDVVGQITGIRVF 186 GVILVDELAHSNVPGSRHAKRWQDIDELLRAGIDVYTTLNVQHIESLNDVVGQITGIRVF Sbjct: 126 GVILVDELAHSNVPGSRHAKRWQDIDELLRAGIDVYTTLNVQHIESLNDVVGQITGIRVF 185 Query: 187 ETVPDHVFDEADDVMLVDIPPDELLTRLQQGKVYLPQQAEKAGRNFFRKGNLIALREIAL 246 ETVPDHVFDEADDVMLVDIPPDELL RLQQGKVYLPQQAEKAGRNFFRKGNLIALREIAL Sbjct: 186 ETVPDHVFDEADDVMLVDIPPDELLARLQQGKVYLPQQAEKAGRNFFRKGNLIALREIAL 245 Query: 247 RRTADRVDADMRQYRADRSIAQLWQARERIVVAVGSGAGEERLIREGARLAAKLQAEWLA 306 RRTADRVDADMRQYRADRSIAQLWQARE IVVA+GSG+GEERLIRE ARLAAKLQA+WLA Sbjct: 246 RRTADRVDADMRQYRADRSIAQLWQARECIVVAIGSGSGEERLIREAARLAAKLQAQWLA 305 Query: 307 VHVDLPRQRQSMNERERVVAYLKLAQSLGAETASISGEQLSAALLQFARSRNAGKLVIGQ 366 VHVDLP QRQ+M RERVV+YLKLA SLGAETASISGE+L+AALLQFARSRNAGKLVIGQ Sbjct: 306 VHVDLPGQRQAMEARERVVSYLKLAHSLGAETASISGEELAAALLQFARSRNAGKLVIGQ 365 Query: 367 EEGGLRRLLRWPRGSLSQRIASAGGEIDLYTIARSRTREHQEERSMDSAASAAEALLTRR 426 EEGGLRRLLRWPRG+L+QRIA +GGEIDLYTIARSRTR E S DSAASAAEALLTRR Sbjct: 366 EEGGLRRLLRWPRGTLAQRIARSGGEIDLYTIARSRTRHQHEPASPDSAASAAEALLTRR 425 Query: 427 RRTRGSLWAVASCAATTTLAFVLDGKLHPANVIMLYLVGVMLVAMRYGRAASILVSVLSV 486 RRTRG+LWAVASCA TTTLAF+LDGKLHPANVIMLYLVGVMLVAMRYGRAAS LVSVLSV Sbjct: 426 RRTRGTLWAVASCAITTTLAFLLDGKLHPANVIMLYLVGVMLVAMRYGRAASALVSVLSV 485 Query: 487 LSFDFFFVDPRFSISVSDAQYLLTLAVMLAVSLFISSLTARLRRQASVAMQREARAANLY 546 LSFDFFFVDPRFSI+VSDAQYLLTLAVMLAVSLFISSL ARLRRQASVAMQREARAANLY Sbjct: 486 LSFDFFFVDPRFSITVSDAQYLLTLAVMLAVSLFISSLAARLRRQASVAMQREARAANLY 545 Query: 547 MLGKELSALLTLDQILEIGRRHLAAVFGARIAFFLPDSAEQLRLAEPQADSGGAHVLRSV 606 MLGKELSALLTLDQILEIGRRHLAAVFGARIAFFLPDSA+QLRLAEP+ DSG AHV R+V Sbjct: 546 MLGKELSALLTLDQILEIGRRHLAAVFGARIAFFLPDSADQLRLAEPEQDSGAAHVFRNV 605 Query: 607 DAGVAQWVYDNGQPAGKGTATLPSAAALYLPLMATMRTRGVLAFAIEAPSEEERQLAAAQ 666 DAGVAQWVYDNGQ AGKGTATLPSAAALYLPL ATMRTRGVLAFAIEAPSEEERQLAAAQ Sbjct: 606 DAGVAQWVYDNGQAAGKGTATLPSAAALYLPLTATMRTRGVLAFAIEAPSEEERQLAAAQ 665 Query: 667 LALPENRQMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTS 726 LALPENRQMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTS Sbjct: 666 LALPENRQMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTS 725 Query: 727 LVGSAEVLAGDARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALE 786 LVGSA+VLA +ARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALE Sbjct: 726 LVGSADVLAANARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALE 785 Query: 787 ELTGSALRLLAKALEGRLVETRIAPDLPLLRVDAVLLERVLANLVENAIKYSPPGSSITI 846 EL GSALRLLAKALEGR V+TRIAP+LPLLRVDAVLLERVLANLVENAIKYSPPG+ I I Sbjct: 786 ELAGSALRLLAKALEGRQVDTRIAPELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGI 845 Query: 847 AAHVEDIDDAPQVKVSVIDHGRGFPPAMTQHAFEKFTRGDNESATPGVGLGLAICRAIIE 906 +AHVE D APQVKV V+D GRGFPP MTQHAFEKFTRGDNESATPGVGLGLAICRAIIE Sbjct: 846 SAHVEHGDGAPQVKVCVMDQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIE 905 Query: 907 AHQGRIWIAPQEAGQGATVCFTLPVEAQPALPEE 940 AHQGRIWIAPQEAGQGATVCFTLPVE QPA PEE Sbjct: 906 AHQGRIWIAPQEAGQGATVCFTLPVETQPAPPEE 939 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 90/309 (29%), Positives = 144/309 (46%), Gaps = 35/309 (11%) Query: 633 ALYLPLMATMRTRGVLAFAIEAPSEEERQLAAAQLAL------PENRQMLEIFCSQIAMA 686 A+ L +R GVL + + +LA+ A+ + ML +Q+AM Sbjct: 181 AVMLAAFLVVRISGVLTRPLTRVARATHRLASGDYAIRVEVESGDEVGMLAQDFNQLAMT 240 Query: 687 IERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSAEVLAGDARLDDDARA 746 +ER +E+LR ++ +SH+LRTPL L G E L D L DA+ Sbjct: 241 LER---------------NEKLRREFMADVSHELRTPLAILNGQLEALE-DGVLQPDAQT 284 Query: 747 MARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELTGSALRLLAKALEGRLVE 806 + R++ + + + L+ +L D++ AG +T R L L + L + R Sbjct: 285 L-RSLKSEVEHLNKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQR--G 341 Query: 807 TRIAPDLPL---LRVDAVLLERVLANLVENAIKYSPPGSSITIAAHVEDIDDAPQVKVSV 863 R++ +LP + DA L+++L+NL EN+++Y+ G + + AH++ + Sbjct: 342 MRLSCELPASMPVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQ----QHWHLVF 397 Query: 864 IDHGRGFPPAMTQHAFEKFTR--GDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQ 921 D G PP + FE+F R A+ G GLGLAICR I++AHQG I + G Sbjct: 398 DDSEPGVPPEVMARLFERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLG- 456 Query: 922 GATVCFTLP 930 G V LP Sbjct: 457 GLRVVVVLP 465 >gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 131/271 (48%), Gaps = 19/271 (7%) Query: 669 LPENRQMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLV 728 LP+ L+ +A +E A D++ RL++ L+ +SH+LRTPL ++V Sbjct: 15 LPKTSDYLDHLPEAVARVLETQRAARRQADSVT-----RLKDEFLATLSHELRTPLNAIV 69 Query: 729 GSAEVLAGDARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEEL 788 G + L D D + I ++ ++ +LLDM+R+ AG + L + L + Sbjct: 70 GWTQYLLNDHSDADRLVKGLQVIERNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLASV 129 Query: 789 TGSALRLLAKALEGRLVETRIAPDL---PLLRVDAVLLERVLANLVENAIKYSPPGSSIT 845 A+ + A E R +E + P L ++ D L++V+ NL+ NAIK++P ++ Sbjct: 130 AEEAIAAVRPAAEARQIE--LHPALGQGGVILGDPARLQQVVWNLLMNAIKFTPRQGRVS 187 Query: 846 IAAHVEDIDDAPQVKVSVIDHGRGFPPAMTQHAFEKFTR-----GDNESATPGVGLGLAI 900 ++ D V + V D+GRG F++FT+ G S G+GLGLAI Sbjct: 188 LSLRQHD----DTVALEVSDNGRGIKGEFLGSVFDRFTQEDVSTGSTGSTASGLGLGLAI 243 Query: 901 CRAIIEAHQGRIWIAPQEAGQGATVCFTLPV 931 R ++E H G+I A G GA TLP+ Sbjct: 244 ARHLVELHGGQIRAASAGPGMGAAFTVTLPL 274 >gi|300310697|ref|YP_003774789.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 916 Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 36/247 (14%) Query: 704 ESERLRNSLLSAISHDLRTPLTSLVGSAEVLAGDARLDDDARAMARTISEQSQKMVGLMN 763 E+ ++ L+ ISHDLRTPLTS++G A+++ R I ++ M+ ++N Sbjct: 446 EANLAKSGFLTRISHDLRTPLTSILGFADMIQASG---GPHAGHGRIIMRSARHMLTMVN 502 Query: 764 NLLDMARLQAGVVTLNRQWNALEELTGSALRLLAK----ALEGRLVETR--------IAP 811 +L+D AR + L+ + L L A A EG+++ R I+P Sbjct: 503 DLIDYARG-----------DPLDTPQPTPLYLHALLQEIAQEGQVLAQRQHNHFTLDISP 551 Query: 812 DLP-LLRVDAVLLERVLANLVENAIKYSPPGSSITIAAHVE---DIDDAPQ--VKVSVID 865 DLP +L +DA L R+L NL++NA KY+ G I HV+ D DA + +++ V D Sbjct: 552 DLPPVLALDARRLHRILGNLLDNAAKYTREGR---IGLHVQWQADHADAGKGALQIEVSD 608 Query: 866 HGRGFPPAMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATV 925 G G P FE F R D + PG+G+GLAI R ++ G I + + G G + Sbjct: 609 TGCGIAPQFQSRIFEPFERADADRRQPGIGMGLAIVRLWVQRMGGSI-VLESQPGMGTRM 667 Query: 926 CFTLPVE 932 LP E Sbjct: 668 HLQLPAE 674 >gi|300311514|ref|YP_003775606.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 473 Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 19/241 (7%) Query: 703 MESERLRNSLLSAISHDLRTPLTSLVGSAEVLAGDARLDDDARA--MARTISEQSQKMVG 760 MES+R LL +SH+LR+P+ L +V G AR+ D + I +S +M Sbjct: 238 MESQR---RLLHDVSHELRSPIARL----QVAIGLARVQDKDKLDLTLERIERESVRMDK 290 Query: 761 LMNNLLDMARLQAGVVTLNRQWNALEELTGSALR---LLAKALEGRLVETRIAPDLPLLR 817 L+ LL ++RL+A V + A+E + G + A+A+ G+ V+ ++ + + + Sbjct: 291 LVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAI-GKHVDDQLDCRVQV-K 348 Query: 818 VDAVLLERVLANLVENAIKYSPPGSSITIAAHVEDIDDAPQVKVSVIDHGRGFPPAMTQH 877 + LL R + N++ NAIK++ PG+++ I +++I+ + +S++D G G P Sbjct: 349 GNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINKL--LHLSILDRGPGVPEEEMNS 406 Query: 878 AFEKFTRGD-NESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLPVEA-QP 935 FE F R +S + G GLGL+I R I+EAHQG I A + G G V TLP A +P Sbjct: 407 IFELFFRSSRTKSNSSGHGLGLSIARRIVEAHQGFIQAANRSNG-GLRVDITLPFMADEP 465 Query: 936 A 936 A Sbjct: 466 A 466 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,692,292 Number of extensions: 112649 Number of successful extensions: 613 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 528 Number of HSP's successfully gapped: 44 Length of query: 940 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 846 Effective length of database: 1,174,780 Effective search space: 993863880 Effective search space used: 993863880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)