BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3683.p (907 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspiri... 701 0.0 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 363 e-101 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 359 e-100 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 291 1e-79 gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspiri... 265 1e-71 >gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 824 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/789 (47%), Positives = 499/789 (63%), Gaps = 11/789 (1%) Query: 10 QFEQWIQQSQHRRFMRLSFPHQDALAARLLVQRLDAEEHLSRDFVLRVQLISDDPHLALK 69 ++++ +Q QH R ++L F + DA A LL+ RL+A E LSRD+V ++L+SDD H+ L Sbjct: 7 RWDKLTRQRQHNRILQLFFINDDAPDAELLINRLEASEALSRDYVYTLELLSDDAHIPLD 66 Query: 70 DVMGKLLVIELVREDGTLRYFSGHVFAFCRQRADGAIVVYEAELGPWFRLLSLRSDHYIF 129 +MGKLL + L R DGT R+F+G+V F R+DG I YEA L PW L+ R ++ IF Sbjct: 67 AMMGKLLRVALTRADGTQRHFTGYVERFAFLRSDGGIAFYEARLVPWLAFLASRHNNRIF 126 Query: 130 HDRTLLQQTEEIFADYPSHARWQWQVSANDPAMADACQFGETDHNYLCRRWEAAGWHYWY 189 H +L + IF YP HARW Q+ DP + QF E+D N L RRWE AGWHY Y Sbjct: 127 HHLSLEGLSAAIFRAYPMHARWDCQLRHGDPVRTEMFQFDESDSNLLHRRWEDAGWHYHY 186 Query: 190 EHDASGHTLIVGSDSRNQAAIDGDECVRFHGAAGSIEDDAIDHWSPQRQLVASSVALGSF 249 EH A GH L + DS IDG V F G+IE+D + WS RQ SS L S+ Sbjct: 187 EHQADGHQLRLSDDSTYAKPIDGTGQVPFQRHGGAIEEDGMAQWSAVRQFQPSSTRLSSY 246 Query: 250 DFKSPYPNWIDIPTLNQQGLAPALEHYEYTGQYGYRDLADGDAQSRLRIEEIEARARHVQ 309 DFK+ P +++PTLN+QG +EHYEY G YG+ + DGD QSRLR+EE EA A+ + Sbjct: 247 DFKAARPQEVEVPTLNKQGAVLQVEHYEYAGAYGFANRDDGDRQSRLRMEEFEAAAQVFE 306 Query: 310 GQGNCRTLMPGRWFRLLDHFERPRFDARRQRGQDEFLILTVRHRVLNNYLPDPEQDHPAP 369 G GNCR L PGR FRL HF R E LI++V H NNYL D E P Sbjct: 307 GTGNCRFLQPGRTFRLTGHFSGSAASHDHDR-DPELLIISVEHSATNNYLQDSET--PPF 363 Query: 370 YRNWFSCTRRKYPWRPGRGFNSVAPYAIGSQTATVVGLPGQPALYTDAYGRVRVQFHWDR 429 Y N C R++ PWRPGR + S +G QTATVVG P L+ D YGRV+VQFHWD+ Sbjct: 364 YANRVRCVRKRIPWRPGRSYYSQPTALLGIQTATVVG-PAGENLHVDEYGRVKVQFHWDQ 422 Query: 430 VGQNDSGSSTWVRVASNWAGAQLGALALPRVGTEVVVQWLDGNPDRPLITGSVYNGSHLP 489 +G+ND SS W+RVAS+W+G + G +++PR+G V+VQWL G+PDRP+ITGSV N ++P Sbjct: 423 IGRNDERSSAWLRVASSWSGGEQGLVSVPRIGQLVIVQWLGGHPDRPIITGSVVNQLNMP 482 Query: 490 PWELPAQRSLSGLRSRELTDQGGNAALGRSNHLILDDTAGQMQAQLHSDQASSALSLGHL 549 PW LP+Q +LSG+RSREL + GNA GRS H++ DDT +Q Q+ SD S L+LGH+ Sbjct: 483 PWTLPSQSALSGMRSRELAPRTGNAPGGRSGHVLFDDTHEAIQTQVRSDAFDSQLALGHI 542 Query: 550 HRIEDHLGRKEARGQGWELRTDAWGVLRAGLGMLITTEARARARGHAKALAETLARLVSA 609 RIE H GR++ARG+G+ELRTDA GV+RA G+L+T+E R +A H + ET+ARL A Sbjct: 543 TRIERHAGRQDARGEGFELRTDAHGVVRAAQGLLLTSEPRPKAHRHTTDIGETVARLTQA 602 Query: 610 RQQQQRQAKLAERAAAQDGAARQAQVVDALQAQNAAIGGRAGDQEAAAQSDFPELSAPLL 669 R + +KLA+ AQD A Q A++AQN AI G AA FPEL+ P L Sbjct: 603 RGTVESLSKLAQEHEAQDKNADQYDAAQAIKAQNDAIKGDG----AAKGGRFPELTEPHL 658 Query: 670 VLSSPAGIAATSAGDTHLASAGDTAVTAGRHLSLSALGNFFASVRQAIRLFIEQAGLRIV 729 VLSSP+GI A+S THLASA A+TAG H+SL+A +FFAS + + L + G +++ Sbjct: 659 VLSSPSGIEASSGASTHLASAEHAALTAGSHISLAAGKSFFASAAEKLSLLAYRLGAKLI 718 Query: 730 AAAGDIDLRALKDNIHLLAK--LKITQTADEIILSAHQRIVINGGGSYARLDAEGIELGT 787 AA+G ++++A D + LLA+ + I T D I L A + I +NGGGS + AEGI T Sbjct: 719 AASGRVEIQAQNDGMELLAQKVVDIISTRDWINLKAKKGIRLNGGGSELVI-AEGITGFT 777 Query: 788 RGQFQVRAS 796 +G V A+ Sbjct: 778 QGAHHVHAA 786 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust. Identities = 255/856 (29%), Positives = 428/856 (50%), Gaps = 66/856 (7%) Query: 38 LLVQRLDAEEHLSRDFVLRVQLISDDPHLALKDVMGKLLVIELVREDGTLRYFSGHVFAF 97 LL QR+ E L R + + L+S + LK ++ + + + L ++ G+V Sbjct: 46 LLPQRMVGSERLGRGYDYTIDLVSTRDDIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTA 105 Query: 98 CRQRADGAIVVYEAELGPWFRLLSLRSDHYIFHDRTLLQQTEEIFADYPSHARWQWQVSA 157 R +DG + ++ + PW L R D I+ D ++F D ++AR ++ Sbjct: 106 RRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDILADVF-DQHAYARGNYRFEI 164 Query: 158 NDPAMADA-CQFGETDHNYLCRRWEAAGWHYWYEH--DASGHTLIVGSDSRNQAAIDGDE 214 PA+ + C ETD +++ R E GW+ ++E D SGH L++ +D+ +QA E Sbjct: 165 VTPALPRSYCTQYETDWHFVQRLMEEEGWYAYHEQKPDGSGHVLVI-TDNTDQAKPLAPE 223 Query: 215 CVRFHGAAGSIEDDAIDHWSPQRQLVASSVALGSFDFKSPYP-NWIDIPTLNQQGLAPA- 272 + FHGA E + I HWS R L ++ +A + D+KSP L + G P Sbjct: 224 QLAFHGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGDQKQTQERVLPEHGALPGE 283 Query: 273 LEHYEYTGQYGYRDLADGDAQSRLRIEEIEARARHVQGQGNCRTLMPGRWFRLLDHFERP 332 LE YEY+G Y Y DGD Q+RLR+E+ E+ + G RTL GRWF L DH Sbjct: 284 LEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVSGARTLAAGRWFTLTDHPAH- 342 Query: 333 RFDARRQRGQDEFLILTVRHRVLNNY-LPDPEQDHPAPYR-------------------- 371 R D+++ +F+++ V + NN L +D P + Sbjct: 343 RGDSKQD---SQFMLIAVEWFIENNLPLSGTARDFPGSLKPQLDAFKASMGRSNDDAGGN 399 Query: 372 -------NWFSCTRRKYPWRPGRGFNSVAPYAIGSQTATVVGLPGQPALYTDAYGRVRVQ 424 N F RRK P+R F+ P + QTA VVG G+ ++TD RV+VQ Sbjct: 400 ARTGHCFNRFEVQRRKLPYR--SPFDHTKP-VMHPQTAVVVGPQGE-EVFTDKLNRVKVQ 455 Query: 425 FHWDRVGQNDSGSSTWVRVASNWAGAQLGALALPRVGTEVVVQWLDGNPDRPLITGSVYN 484 F WDR+ D +S WVRV+ AG G + +PRVG E+++ +L+G+PDRP+ TG ++N Sbjct: 456 FRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRVGQELIISFLNGDPDRPVATGRLFN 515 Query: 485 GSHLPPWELPAQRSLSGLRSRELTDQGGNAALGRSNHLILDDTAGQMQAQLHSDQASSAL 544 P W + LSGL+S+E GGN N L++DDT Q + L+S Q+++ L Sbjct: 516 QEQPPQWHTDGR--LSGLKSKEF---GGNGF----NQLVMDDTTSQNRVHLYSSQSNAQL 566 Query: 545 SLGHLHRIEDHLGRKEARGQGWELRTDAWGVLRAGLGMLITTEARARARGHAKALAETLA 604 +LG+L D+ R+ G G+ L TD +G + G+ +++ R +G +E + Sbjct: 567 NLGYLVSQADN-ERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPGPQGTQLDASEATS 625 Query: 605 RLVSARQQQQRQAKLAERAAAQDGAARQAQVVDALQAQNAAIGGRAGDQEAAAQSDFPEL 664 + ++ + + A RA A+ A Q + D + A G+ Q Sbjct: 626 LMKASADLARGLSDSASRAGAE--ALAQDSLKDFVDATEDKYSGQ-------GQGSANRF 676 Query: 665 SAPLLVLSSPAGIAATSAGDTHLASAGDTAVTAGRHLSLSALGNFFASVRQAIRLFIEQA 724 PLL++++PAGI + T + SA +T +T+G+ S+++ + A+V++ I LF + A Sbjct: 677 KKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKISLFAQNA 736 Query: 725 GLRIVAAAGDIDLRALKDNIHLLAK--LKITQTADEIILSAHQRIVINGGGSYARLDAEG 782 G+++ AA G ++++A D++ L+A+ ++ T+ + + A ++I+ GGS+ ++++ G Sbjct: 737 GMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQINSAG 796 Query: 783 IELGTRGQFQVRASVKHFDG--GKTMPVPQVDGEGMEGFNERFRVVDEFKRPLKNVRYQV 840 I GT G+++ +AS+ G + +P V ++ + FR + ++ PL Y+ Sbjct: 797 ITQGTPGKWEAKASLHSMPGPASQNFVMPHVQKSELQPSDMEFRHLTDWGEPLAGAAYKA 856 Query: 841 RSSSGKTWEGRSDAQG 856 S G +G DAQG Sbjct: 857 ILSDGSVRKGTLDAQG 872 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 359 bits (921), Expect = e-100, Method: Compositional matrix adjust. Identities = 264/899 (29%), Positives = 433/899 (48%), Gaps = 74/899 (8%) Query: 18 SQHRRFMRLSFPHQDALAARLLV-QRLDAEEHLSRDFVLRVQLISDDPHLALKDVMGKLL 76 +QHRR ++L +L +L+ QRL A E L+ + + + L++ +AL+ ++ + + Sbjct: 17 TQHRRLLQLD----SSLGPDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPV 72 Query: 77 VIELVREDGTLRYFSGHVFAFCRQRADGAIVVYEAELGPWFRLLSLRSDHYIFHDRTLLQ 136 + + + DG G+V R +DG + + L PW L R D I+ D+ Sbjct: 73 TLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDKRTED 132 Query: 137 QTEEIFADYPSHARWQWQVSANDPAMADA-CQFGETDHNYLCRRWEAAGW--HYWYEHDA 193 ++F ++P AR ++ P C ETD +++ R E GW H+ D Sbjct: 133 ILADVFNNHP-QARGHYRFQLERPYTPRPYCTQYETDWHFVQRLMEEEGWFAHHEQREDG 191 Query: 194 SGHTLIVGSDSRNQAAIDGDECVRFHGAAGSIEDDAIDHWSPQRQLVASSVALGSFDFKS 253 SGH L++ ++ N + + + FHGAA E D I HWS R L + S D+KS Sbjct: 192 SGHVLVITDNTWNLPGLP-QQGIAFHGAAPRDELDKILHWSASRTLSSKGWRGRSDDYKS 250 Query: 254 P-YPNWIDIPTLNQQGLAPA-LEHYEYTGQYGYRDLADGDAQSRLRIEEIEARARHVQGQ 311 P + + + G PA LE YEYTG Y +R G+ Q+ L++E+ E+ + Sbjct: 251 PGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQVEQWESSMQRYSAV 310 Query: 312 GNCRTLMPGRWFRLLDHFERPRFDARRQRGQDEFLILTVRHRVLNNY------------- 358 R L GRWFRL +H + R + R+R +F+IL + V NN Sbjct: 311 SGVRNLACGRWFRLEEHPQH-RAEPDRER---QFVILAIDWFVENNLPLSHQALDFPGSL 366 Query: 359 ----------------LPDPEQDHPAPYRNWFSCTRRKYPWRPGRGFNSVAPYAIGSQTA 402 + + + +H N F RRK P+RP R A + QTA Sbjct: 367 KGALMAFKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPARAH---ARPVMLPQTA 423 Query: 403 TVVGLPGQPALYTDAYGRVRVQFHWDRVGQNDSGSSTWVRVASNWAGAQLGALALPRVGT 462 VVG P +YTD R++VQF WDR+ + +S WVRV+ AG GA+ +PR+G Sbjct: 424 IVVG-PASEEVYTDHLDRIKVQFRWDRINPGNEAASCWVRVSYPNAGQYWGAIQVPRIGQ 482 Query: 463 EVVVQWLDGNPDRPLITGSVYNGSHLPPWELPAQRSLSGLRSRELTDQGGNAALGRSNHL 522 EV+V +L+G+PDRP++TG ++N P W + LSG++S+E G N + Sbjct: 483 EVIVSFLNGDPDRPVVTGRLFNAEQRPQWHTNGR--LSGVKSKEFGGTG-------FNQM 533 Query: 523 ILDDTAGQMQAQLHSDQASSALSLGHLHRIEDHLGRKEARGQGWELRTDAWGVLRAGLGM 582 ++DDT Q + L+S + L+LGHL + R+ G G+ L TDA+G + G+ Sbjct: 534 VMDDTPEQNRIHLYSTNTHAQLNLGHLVSQTGN-ERRSFFGSGFALSTDAYGAIVTHKGL 592 Query: 583 LITTEARARARGHAKALAETLARLVSARQQQQRQAKLAERAAAQDGAARQA--QVVDALQ 640 I+T R A+G E +L S + ++ A +A A+ A ++A +DA Q Sbjct: 593 YISTYGRPGAQGTQLDAREATGQLKSGANLSRTLSETAAKAGAEPLAGQEALRDFIDATQ 652 Query: 641 AQNAAIGGRAGDQEAAAQSDFPELSAPLLVLSSPAGIAATSAGDTHLASAGDTAVTAGRH 700 A D E +Q+ +L+ +SP GI T+ H + G+ +++G Sbjct: 653 A----------DYEDPSQAQANRFQQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGAD 702 Query: 701 LSLSALGNFFASVRQAIRLFIEQAGLRIVAAAGDIDLRALKDNIHLLAK--LKITQTADE 758 S++ + ASV + I LF +AG+++ +A G ++++A D++ L+A+ ++ + Sbjct: 703 TSIAVGKSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGR 762 Query: 759 IILSAHQRIVINGGGSYARLDAEGIELGTRGQFQVRASVKHFDGGKTMPVPQVDGEGMEG 818 + + A + ++I GGS+ RL+A GI GT G ++ +A G T+ Sbjct: 763 VEIRAKEEVLITAGGSFIRLNASGITQGTSGAWEAKAGTHAMPGPTTLAYEMNKSSAALP 822 Query: 819 FNERFRVVDEF-KRPLKNVRYQVRSSSGKTWEGRSDAQGWTPYFNTDRPENLEIEILHE 876 F+E F + + + P+KN R+++ G G +DAQG T + EN + IL E Sbjct: 823 FDEEFVLRWPYDQSPVKNRRFEIVRGDGTKVRGVTDAQGKTGLQKSLFVENTSLRILPE 881 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 291 bits (746), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 269/954 (28%), Positives = 428/954 (44%), Gaps = 129/954 (13%) Query: 18 SQHRRFMRLSFPHQDALAARLLVQRLDAEEHLSRDFVLRVQLISDDPHLALKDVMGKLLV 77 SQ+ R + ++ L L V+R + EE ++ +F + +S L LK +G + Sbjct: 22 SQNARLITMTTAQSAGLPETLAVERFEGEESVNDNFRFDIDALSISTDLDLKQFIGAEIS 81 Query: 78 IELVREDGTLRYFSGHVFAFCRQRADGAIVVYEAELGPWFRLLSLRSDHYIFHDRTLLQQ 137 + L++ DG R + G+ ADG + Y L + L R D ++F D T+ Sbjct: 82 LRLLQADGGTRAWHGYCTQASWLGADGGLARYRLRLESFLAFLDRRHDSFLFQDMTVTDI 141 Query: 138 TEEIFADYPSHARWQWQVSANDPAMADAC-QFGETDHNYLCRRWEAAGWHYWYEHDASGH 196 + +YP A + +V+ A D C Q+ ETD+ +L R + G ++ +EH+ Sbjct: 142 AAAVLKEYP-QANFSLEVT-QTLAKRDICTQYRETDYAFLRRILASEGLNFRFEHEQDDA 199 Query: 197 T--------------LIVGSDSRNQAAIDGDECVRFHGAAGSIEDDAIDHWSPQRQLVAS 242 T +I +++ A GDE +RFH A DAI ++ R + + Sbjct: 200 TQQHDQSQPHARHKLVIFDRNAKAPALPGGDEYIRFHRVAAMEASDAITDFAAVRSVRPN 259 Query: 243 SVALGSFDFKSPYPNWIDIPTLNQ-----QGLAPALEHYEYTGQYGYRDLADGDAQSRLR 297 VAL S+ +P + P+ + G P+L Y+ TGQ + D A ++L Sbjct: 260 GVALASW-----HPEKLSSPSHEEGSTLDAGELPSLPVYDGTGQQDFADQDAAAAHAQLM 314 Query: 298 IEEIEARARHVQGQGNCRTLMPGRWFRLLDHFERPRFDARRQRGQDEFLILTVRHRVLNN 357 ++ +E + + +G G R L G F LL H P G++ F +++VRH NN Sbjct: 315 LQALEMQNKRFEGAGAARQLAAGARFTLLQHERYPE-------GENAFKVVSVRHAARNN 367 Query: 358 YLPD------------------PEQD---HPAPYRNWFSCTRRKYPWRPGRGFNSVAPYA 396 + E+D YRN F+ R P P + P A Sbjct: 368 VSANITRILAPAAGALFGGSAAAERDDDLQAGTYRNSFTAIRDSVPMVPAAIAERLKPTA 427 Query: 397 IGSQTATVVGLPGQPALYTDAYGRVRVQFHWDR---------------------VGQNDS 435 G+QTA V G A+ TD RV+VQFHW R NDS Sbjct: 428 RGTQTALVTG-AADAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNLDDKDGNANGNDS 486 Query: 436 GSSTWVRVASNWAGAQLGALALPRVGTEVVVQWLDGNPDRPLITGSVYNGSHLPPWELPA 495 S TW+RVA +G G+ +PRVG+EV+V +++G+ DRP++ +YNGS PP+ A Sbjct: 487 -SGTWIRVAEAQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYNGSDAPPFPAGA 545 Query: 496 QR------SLSGLRSRELTDQGGNAALGRSNHLILDDTAGQMQAQLHSDQASSALSLGHL 549 S+SG S G N ++DDT Q++ +L S A S L+LGHL Sbjct: 546 DSGINHAGSISGWHSTAHDGSG-------FNQWVVDDTQSQLRMRLASSTAKSQLNLGHL 598 Query: 550 -HRIEDHLGRKEARGQGWELRTDAWGVLRAGLGMLITTEAR------------------A 590 + + R RGQG+ELR+DAWGV+R G G+L++T AR A Sbjct: 599 VEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMDAAGAIA 658 Query: 591 RARGHAKALAETLARLVSARQQQQRQAKLAERAA----AQDGAARQAQVVDALQAQNAAI 646 + +G AK+LA+T++ SA QQQ + A +A A + Q + ++ Q+A Sbjct: 659 QLKG-AKSLAQTMSD--SATQQQALSSTQALQAKTDFLALIDPSDQGKHPASVNGQDALK 715 Query: 647 GGRAGDQEAAAQSDFPELSAPLLVLSSPAGIAATSAGDTHLASAGDTAVTAGRHLSLSAL 706 + AAQ + + +++ SP+ I TS T L +A + T + SA Sbjct: 716 SDGSTRNTDAAQP-VEKFAKAAVLMDSPSSINWTSNASTLLYAAENLQWTTQGDVHWSAA 774 Query: 707 GNFFASVRQAIRLFIEQAGLRIVAAAGDIDLRALKDNIHLLAKLKITQTA--DEIILSAH 764 A+ +A + G++ AA G + L+A D + +LA +T T+ D I + A Sbjct: 775 DTASAAAGKAASFYSHDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKAR 834 Query: 765 QRIVINGGGSYARLDAEGIELGTRGQFQVRASVKHFDGGKT-----MPVPQVDGEGMEGF 819 Q+IV+ G + L+ I G F V+ + F GG + M +P + F Sbjct: 835 QKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDTK---YKLF 891 Query: 820 NERFRVVDEFKRPLKNVRYQVRSSSGKTWEGRSDAQGWTPYFNTDRPENLEIEI 873 +E F V D PL ++ Y+++SS+G + G + +T+ EN+E + Sbjct: 892 DEAFVVKDPNGTPLSDIPYRIKSSAGDQL-ATTAKDGMSERVSTEASENVEFAM 944 >gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 913 Score = 265 bits (676), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 275/912 (30%), Positives = 402/912 (44%), Gaps = 101/912 (11%) Query: 18 SQHRRFMRLSFP--HQDALAARLLVQRLDAEEHLSRDFVLRVQLISDDPHLALKDVMGKL 75 +Q R +RL P HQ AL LLV + E L + ++ LAL+D + Sbjct: 14 TQKARAIRLRLPPSHQ-ALQDALLVMHVTGRESLCGAMEYELLCLTSREDLALEDFVALP 72 Query: 76 LVIELVREDGTLRYFSGHVFAFCRQRADGAIVVYEAELGPWFRLLSLRSDHYIFHDRTLL 135 + I+LV + G LR G + + D +V Y L L+ R + +F + Sbjct: 73 VEIQLVTDLGLLRTVCGFIAEAHAGQLDDELVSYRLVLRDALSLMGHRINTRVFLRASEA 132 Query: 136 QQTEEIFADY-------PSHARWQWQVSAND-PAMADACQFGETDHNYLCRRWEAAGWHY 187 T+ + +++ S W + A PA Q E+D ++L R W+ G + Sbjct: 133 DVTQALVSEWRQRSPLMASSFEVDWSLLAERFPAREFIMQHNESDADFLRRLWKRRGISW 192 Query: 188 WYE-------HDASG--HTLIVGSDS----RNQAAIDGDECVRFHGAAGSIEDDAIDHWS 234 + H A HTL++ D+ RN A V + E+D I W Sbjct: 193 FIRPGEPPLPHQAGSPRHTLVLFDDAVQLPRNAAG-----AVSYRQDHAPAEEDGIVRWL 247 Query: 235 PQRQLVASSVALGSFDFKSPYPNWIDIPTLNQQG-----LAPALEHYEYTGQYGYRDLAD 289 R+L A SV+ ++D P + T+ +QG A L+ Y + D D Sbjct: 248 GTRRLRAGSVSRHAWDHAQDGPMRSQVNTVAEQGELGDHFARLLDDYFIEAPHIADDRED 307 Query: 290 GDAQSRLRIEEIEARARHVQGQGNCRTLMPGRWFRLLDHFERPRFDARRQRGQDEFLILT 349 + R++ + Q R L G W + DH P D RR + EF+I Sbjct: 308 FHQIATARMQRLAQETAEFQADSTIRALRVGEWIGVKDH---PELD-RRAAHEREFVITR 363 Query: 350 VRHRVLNNYLP-------------DPEQDHPAP-----------YRNWFSCTRRKYPWRP 385 + NN+ D + AP Y N F+C RR P Sbjct: 364 LEVYAENNFPASLDEHVRLVARHHDSSLEDLAPLRRRCLAQGRRYLNRFTCVRRGTPLVA 423 Query: 386 GRGFNSVAPYAIGSQTATVVGLPGQPALYTDAYGRVRVQFHWDRV-------GQNDSGS- 437 P A+ Q A VVG P LY DA GR++++FH R+ G SGS Sbjct: 424 AFDPRVDLP-AVRVQNAHVVG-PAGEELYCDALGRIKLRFHGTRMQDHQHAGGAGASGSE 481 Query: 438 --STWVRVASNWAGAQLGALALPRVGTEVVVQWLDGNPDRPLITGSVYNGSHLPP----- 490 S WVRVAS+WAG Q GA++LPRVG EV+V +L G+PD+P++ G VYNG LPP Sbjct: 482 RDSAWVRVASHWAGRQWGAISLPRVGDEVLVDFLGGDPDKPIVVGRVYNGQSLPPAFSRV 541 Query: 491 WELPAQRSLSGLRSRELTDQGGNAALGRSNHLILDDTAGQMQAQLHSDQASSALSLGHLH 550 LP R L+G++S+E+ Q R N L LDDT Q+ AQL S S L+LG L Sbjct: 542 GSLPGNRFLAGIKSKEIQGQ-------RYNQLRLDDTPQQISAQLASQHGQSELNLGWLT 594 Query: 551 RIEDHLGRKEARGQGWELRTDAWGVLRAGLGMLITTEARARARGHAKALAETLARLVSAR 610 GR +ARG+G ELRTD LR G G+LI+ R A G AE L L + Sbjct: 595 HPRAG-GRSDARGEGAELRTDQALALRGGQGVLISAVMRQEASGTQLDRAEMLGLLHVLQ 653 Query: 611 QQQQRQAKLAERAAAQDGAARQAQVVDALQAQNAAIGGRAGDQEAAAQSDFPELSAPLLV 670 QQ+ A LA+ A D Q Q L+ Q A + Q A+SD P++ Sbjct: 654 DVQQQLATLAQTHHADD---TQLQTFSRLRDQLDAWEAGSNTQ---AKSDGG--GKPMVA 705 Query: 671 LSSPAGIAATSAGDTHLASAGDTAVTAGRHLSLSALGNFFASVRQAIRLFIEQAGLRIVA 730 +++PAG+A TS L + + + + + SA A V ++I LF ++ G+++VA Sbjct: 706 VTAPAGVAITSDEGVALGAQKEIDLISVGNTQFSAGKKLLARVAESICLFAQRLGIQLVA 765 Query: 731 AAGDIDLRALKDNIHLLAKLKITQT-ADEIILSAHQRIVINGGGSYARLDAEGIELGTRG 789 A G + L+ ++ + + +I T ADEI+L A R+ + G+ L I + G Sbjct: 766 ANGKLQLQTHGGDVEVTSARRIVLTAADEIVLQA-PRLRLQAQGAQIDLGGGVITQQSSG 824 Query: 790 QFQVRA-SVKHFDGGKTMPVPQVD-GEGMEGFNERFRVVDEFK-RPLKNVRYQVRSSSGK 846 +R+ + H G + P P V+ +ERF + RP RY++ G Sbjct: 825 DHVIRSGNFHHVSGADSQP-PGVELPASTMRTDERFILARRGSGRPHVRQRYRIELDDGS 883 Query: 847 TWEGRSDAQGWT 858 EG +D QG T Sbjct: 884 VIEGVTDEQGRT 895 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,843,170 Number of extensions: 123565 Number of successful extensions: 444 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 366 Number of HSP's successfully gapped: 12 Length of query: 907 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 813 Effective length of database: 1,174,780 Effective search space: 955096140 Effective search space used: 955096140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)