BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3677.p (254 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313540|ref|YP_003777632.1| transcription regulator protein... 154 5e-39 gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 151 4e-38 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 124 5e-30 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 70 2e-13 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 69 4e-13 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 154 bits (390), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 91/217 (41%), Positives = 128/217 (58%), Gaps = 4/217 (1%) Query: 39 IYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAFVA 98 +Y+ I AIMEHRL P TKL E+ L I+ R VR+VLARLA EG++ NRGAF+A Sbjct: 31 MYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEANRGAFIA 90 Query: 99 SPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARADNDRRAIIRLS 158 SP+P E R++F R +LE A+L L IA LR V EE + DR IRLS Sbjct: 91 SPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEERDCYLNGDRPRWIRLS 150 Query: 159 GEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGHIIDAISEGRTE 218 +FH+ +A++ N ++ + +R+L S T L+I ++P AC+ D+H +++A+ +G + Sbjct: 151 AQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEKGDIK 210 Query: 219 DAIATMLEHLHHIESVLDMSTPQGEDD-DLEALLGMG 254 A A M HLH E D P +D DL A+LG G Sbjct: 211 AAQAHMAHHLHLCE---DRVRPDADDQFDLRAVLGKG 244 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 151 bits (382), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 87/215 (40%), Positives = 120/215 (55%) Query: 33 PLAGDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPN 92 P + DAI I I RL PG KL EE LA ++ V+RT++R L LA + L+ IP+ Sbjct: 8 PDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPD 67 Query: 93 RGAFVASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARADNDRR 152 +GAFV+ PT EE RNIF RR LE A++R PE A L AH+ E QA +D++ + Sbjct: 68 KGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNMQ 127 Query: 153 AIIRLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGHIIDAI 212 L +FHI +A +V N V++ ++ +LA + LI +LY S AC+ ++H I A Sbjct: 128 VRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAAA 187 Query: 213 SEGRTEDAIATMLEHLHHIESVLDMSTPQGEDDDL 247 G TE A+ M HL H+E L G DL Sbjct: 188 RAGDTERAMELMEHHLLHVEQALAFEPKAGPRKDL 222 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 124 bits (312), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/201 (38%), Positives = 113/201 (56%), Gaps = 5/201 (2%) Query: 39 IYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAFVA 98 I RI AI+ +L PGT+L E++LA +F V+RT+VRE L L G++ RG FV Sbjct: 13 IAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARRGWFVI 72 Query: 99 SPTPEEARNIFAARRLLEPALLRHLCEHTRP---EHIALLRAHVAEEAQARADNDRRAII 155 PTP +AR F ARR++E LLR RP I LR H+A E A A D A Sbjct: 73 EPTPAQAREAFEARRVIELGLLRQ--ARLRPVGDTAIGQLREHIAREEAAIAGADVGARS 130 Query: 156 RLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGHIIDAISEG 215 L G+FH+ +A+ + N ++++ +R+L + T L +L+ S + +H I++A+ G Sbjct: 131 YLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIVEALERG 190 Query: 216 RTEDAIATMLEHLHHIESVLD 236 E A M +HL H+ES L+ Sbjct: 191 DLEQAEQLMHDHLQHVESGLN 211 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 90/198 (45%), Gaps = 9/198 (4%) Query: 36 GDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGA 95 +A+ E I I +L+PG L E LA FGV+RT +RE L +LA G++ P RGA Sbjct: 8 AEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGA 67 Query: 96 FVASPTPEEARNIFAARRLLEPALLRHLCEHTRP-EHIALLRAHVAEEAQARADNDRRAI 154 VA P++ +F E R P EH LL AH A +A AR ND A Sbjct: 68 IVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQA-ARDANDPDAY 126 Query: 155 IRLSGEFHIRIADMVDNPVMSK----MMRELASLTCLIIVLYDSPTVPACTHDDHGHIID 210 L+ FH I N ++ + R L L + + D + D+H ++D Sbjct: 127 FYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLK---SSFDEHQAVVD 183 Query: 211 AISEGRTEDAIATMLEHL 228 AI G E + + EH+ Sbjct: 184 AIISGDAEKTVDLLREHI 201 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 68.6 bits (166), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 4/194 (2%) Query: 39 IYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAFVA 98 ++ +I AI++ + PG+K+ E +LA +G++R +RE + RL + L++ +P+ GA V Sbjct: 21 VFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGARVV 80 Query: 99 SPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARADNDRRAIIRLS 158 S T E +F R LE R + + LR + + A R + Sbjct: 81 SLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQAGRGYYQQE 140 Query: 159 G--EFHIRIADMVDNPVMSKMM-RELASLTCLIIVLYD-SPTVPACTHDDHGHIIDAISE 214 G +FH +I N ++++++ EL L + + Y +P P +H I+DA+++ Sbjct: 141 GDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQAFAEHHRILDALAD 200 Query: 215 GRTEDAIATMLEHL 228 G E A M H+ Sbjct: 201 GDGELADLLMRRHI 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 717,529 Number of extensions: 26373 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 9 Length of query: 254 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 171 Effective length of database: 1,226,865 Effective search space: 209793915 Effective search space used: 209793915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)