BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3672.p
         (474 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309810|ref|YP_003773902.1| dihydroorotase [Herbaspirillum ...    71   2e-13

>gi|300309810|ref|YP_003773902.1| dihydroorotase [Herbaspirillum
           seropedicae SmR1]
          Length = 428

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 186/460 (40%), Gaps = 52/460 (11%)

Query: 4   FDLVIRNGTVATAADIM--QCDVGIKDGKVAMLGRGLPPG----REEIDASGKLVLPGGV 57
             L I+NG +   A+ +  Q DV +  GK+  +G G  P      + IDA+G +V PG V
Sbjct: 1   MKLHIKNGRLIDPANGIDAQQDVYVAAGKI--VGVGQAPADFVANKTIDATGLVVAPGLV 58

Query: 58  DAHCHLDQPMEEGLRMADDFRSGTISAACGGTTTVI--PFAAQAKGGSLRAAVEDYHRRA 115
           D    L +P   G        S   +A  GG T+++  P             +  +  R+
Sbjct: 59  DLSARLREP---GYEYKATLESEMQAAIQGGVTSLVCPPDTDPVLDEPGLVEMLKHRARS 115

Query: 116 EGKAVIDYAFHMIVSDPSEEVLKHELPQLVREGYTSFKIYMTYDDLKLNDRQILDLLALA 175
             +A + Y    + +    + L  E+ +L   G   F    +  +  + D  +L L AL 
Sbjct: 116 LNQAHV-YPLGALTAGLKGKALT-EMAELTDAGCIGF----SQAEEPITDTTVL-LSALQ 168

Query: 176 RREGALVMVHAENADCIGWLTEQ--------LEEAGLTAPKYHAHSRPMMVEREATHRAI 227
                    +A+  +   WL  Q        +  +G  A +      P+M E  A +   
Sbjct: 169 ---------YAKTFNYTVWLRPQDPHLGRSGIAHSGPAASRLGLSGVPVMSETIALYTLF 219

Query: 228 ALSELVDVPILIVHVSGREAIEQIRWAHGHGLRIHAETCPQYLVLTADHLDDGYHGAKCV 287
            L       + +  +S    +E +R A   GL +  +    ++ L    LD G+  +   
Sbjct: 220 ELMRATGARVHLCRMSSAAGLELVRQAKSEGLPVTCDVGVHHIHLC--DLDIGFFDSNAR 277

Query: 288 CSPPPRDKANQQYVWDGLASGLFTVFSSDHAPFRYEDAQGKKPGGREVPFRYIPNGTPGL 347
            +PP R + +++ +   L  G      SDH P   ++        + +PF     G  GL
Sbjct: 278 MTPPLRSQRDREAIRTALLDGTIDAVCSDHTPVDDDE--------KLLPFGEASPGATGL 329

Query: 348 ETRLPILFS---EGVGKGRIDLNRFVALTATDPAKMYGLYPRKGTIAIGSDADIAIWDPH 404
           E  L +      E  G+G+  L++ ++      AK+ GL  + G +A+GS AD+ ++DP+
Sbjct: 330 ELLLSLSLKWALETEGEGKEVLSKAISKVTHRAAKVAGL--KAGNLAVGSVADLCLFDPN 387

Query: 405 RAVTVRNEMLHHDVDYTPYEGMELTGWPVLTLSRGEIVWN 444
               V+   L     +TP+ G EL G    T+  G I + 
Sbjct: 388 AMWKVQGAALASQGKHTPFLGYELPGVVKATIVSGHIAFE 427


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,698,542
Number of extensions: 78878
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 385
Effective length of database: 1,198,455
Effective search space: 461405175
Effective search space used: 461405175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)