BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3668.p (276 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313063|ref|YP_003777155.1| transcription regulator protein... 480 e-137 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 210 1e-55 gi|300313272|ref|YP_003777364.1| transcription regulator protein... 207 7e-55 gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 172 3e-44 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 133 2e-32 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 480 bits (1235), Expect = e-137, Method: Compositional matrix adjust. Identities = 239/276 (86%), Positives = 252/276 (91%), Gaps = 3/276 (1%) Query: 1 MSEIDHSAAAATTATSAETEDSSTSGLSRRDWIAGLEKGLLILEAFDYDNQRMTSAQVAA 60 M+E D + A S E + + GLSRRDWIAGLEKGLLILEAFD+DNQRMTSAQVAA Sbjct: 1 MNERDKNGPADD---SREVCEPTEGGLSRRDWIAGLEKGLLILEAFDFDNQRMTSAQVAA 57 Query: 61 RTGLSRTAARRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPHLQQIT 120 RTGLSRTAARRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQP LQQIT Sbjct: 58 RTGLSRTAARRYLLTLEHLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQIT 117 Query: 121 GQTGEAVYASVLDGWELVFIARNGATRVMTTGFVLGARVPAQLASPGIVMLGALPEQQVR 180 GQTGEAVYASVLDGW+LVFIARNGATRVMTTGFVLGARVPAQLASPGIVML ALPEQQVR Sbjct: 118 GQTGEAVYASVLDGWDLVFIARNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVR 177 Query: 181 AWLATCAMTPFTPHTITDPNRLYELIAQARQQGYALVEQQLQTGVRGIAVPLKNRHAKVI 240 WLATCAMTPFTPHTITDP++LY LIAQARQ GYA+VEQQLQTGVRGIAVPLKNRHAKVI Sbjct: 178 DWLATCAMTPFTPHTITDPDQLYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVI 237 Query: 241 GALSLSFPMAVESQEQTLVRVLPALQQAANALIHQV 276 GALSLS PMA E++EQTL R+LPALQQAANALI+ V Sbjct: 238 GALSLSLPMAAEAREQTLARILPALQQAANALINLV 273 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 210 bits (534), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 107/250 (42%), Positives = 164/250 (65%) Query: 27 LSRRDWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEG 86 + +RD I GL KG ++ AFD D+ ++++++VA R GL+R+AARRYLLTL H G S+G Sbjct: 11 IQKRDLIEGLMKGFDVITAFDSDSPQLSASEVAERVGLTRSAARRYLLTLVHTGMAASDG 70 Query: 87 KTFALTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWELVFIARNGAT 146 K F L PR+L +G SY +SA +PR + P LQ++T Q E+ S+LDG E+V++ R A Sbjct: 71 KKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQLQESTNFSLLDGDEIVYVTRVTAA 130 Query: 147 RVMTTGFVLGARVPAQLASPGIVMLGALPEQQVRAWLATCAMTPFTPHTITDPNRLYELI 206 +++ GF G R+PA + G V+LG + +++A+L + P T +TD L++ I Sbjct: 131 QLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYLERVNLIPHTHMAMTDKAALFQEI 190 Query: 207 AQARQQGYALVEQQLQTGVRGIAVPLKNRHAKVIGALSLSFPMAVESQEQTLVRVLPALQ 266 R+QGY + E Q + G+RGIA+ +KNR+ +VIGALS++ +A S+E+ + R +PALQ Sbjct: 191 LTMRRQGYGITENQFEMGMRGIAIAVKNRNGRVIGALSVTSNIAACSREEAIARGVPALQ 250 Query: 267 QAANALIHQV 276 AN L+ V Sbjct: 251 TTANTLMMWV 260 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 207 bits (527), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 114/248 (45%), Positives = 157/248 (63%) Query: 18 ETEDSSTSGLSRRDWIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLE 77 E + G +RD +AGLEKGL ++EAFD + R+T A+VA TGL+R AARRYL+TL Sbjct: 8 EEPGDADEGPLKRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLT 67 Query: 78 HLGYLHSEGKTFALTPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWEL 137 HLGY+ + KTF+LTP VL++G SY SA LPRI+QP L ++ GEA VLD +L Sbjct: 68 HLGYMRHDNKTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQL 127 Query: 138 VFIARNGATRVMTTGFVLGARVPAQLASPGIVMLGALPEQQVRAWLATCAMTPFTPHTIT 197 V +A A ++++T G RVPA + G ++L LP Q+ A LA T HTIT Sbjct: 128 VCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAILARAQPEAITAHTIT 187 Query: 198 DPNRLYELIAQARQQGYALVEQQLQTGVRGIAVPLKNRHAKVIGALSLSFPMAVESQEQT 257 D RL IA+AR QGYALV+Q+L+ G+R +AVP++N +V+ A+++S E Sbjct: 188 DVERLGLEIARARVQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAGRMKLEDM 247 Query: 258 LVRVLPAL 265 + R LPA+ Sbjct: 248 VERCLPAM 255 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 172 bits (435), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 140/241 (58%) Query: 32 WIAGLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYLHSEGKTFAL 91 ++ L +GL ++ AF + +T AQ++ +TG+ R A RR L TL+ LGY S+ F+L Sbjct: 15 FMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADSDVNNFSL 74 Query: 92 TPRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWELVFIARNGATRVMTT 151 P++L +G+SY S PL QP+L I+ GE+ +VLD E++++AR+ A+RVM+ Sbjct: 75 RPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASRVMSV 134 Query: 152 GFVLGARVPAQLASPGIVMLGALPEQQVRAWLATCAMTPFTPHTITDPNRLYELIAQARQ 211 G+R+PA S G ML LPE Q++A+ + T T+ RL +++A R Sbjct: 135 ALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILAGVRA 194 Query: 212 QGYALVEQQLQTGVRGIAVPLKNRHAKVIGALSLSFPMAVESQEQTLVRVLPALQQAANA 271 GYA+++++L+ G+R IAVP++ V+ AL++ A S Q +LP L + A Sbjct: 195 NGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLRGAQE 254 Query: 272 L 272 L Sbjct: 255 L 255 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 139/244 (56%), Gaps = 2/244 (0%) Query: 35 GLEKGLLILEAFDYDNQRMTSAQVAARTGLSRTAARRYLLTLEHLGYL--HSEGKTFALT 92 LEKGL +L AF+ ++ MT VA+ TG+S+++A+R + TLE LGY+ H + + + LT Sbjct: 16 SLEKGLAVLRAFNAQHRTMTLGDVASATGISKSSAQRMVHTLETLGYICKHPKTRRYQLT 75 Query: 93 PRVLKVGWSYFDSAPLPRILQPHLQQITGQTGEAVYASVLDGWELVFIARNGATRVMTTG 152 P+V++VG++Y + L + P L ++ TGE V + E+V++AR A++ + Sbjct: 76 PKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYDGEMVYVARFVASKFIPIH 135 Query: 153 FVLGARVPAQLASPGIVMLGALPEQQVRAWLATCAMTPFTPHTITDPNRLYELIAQARQQ 212 +G+R+P + G L AL ++ +A L + T TPHT TD + +L+A +R++ Sbjct: 136 MPIGSRIPMYCTASGRAYLSALEPEEAQAILESSERTVHTPHTRTDVEDIMQLLAASRER 195 Query: 213 GYALVEQQLQTGVRGIAVPLKNRHAKVIGALSLSFPMAVESQEQTLVRVLPALQQAANAL 272 G+A ++L G IA P+ N K + ++ + P + S E+ ++ P + + A A+ Sbjct: 196 GFASNREELFLGDMSIASPVFNSERKPVASVHVVAPTSRWSVEEAEKKLGPLVLECARAI 255 Query: 273 IHQV 276 + V Sbjct: 256 SNSV 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 815,224 Number of extensions: 33596 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 9 Length of query: 276 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 192 Effective length of database: 1,222,130 Effective search space: 234648960 Effective search space used: 234648960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)