BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3655.p
         (447 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313040|ref|YP_003777132.1| hypothetical protein Hsero_3746...   619   e-178

>gi|300313040|ref|YP_003777132.1| hypothetical protein Hsero_3746
           [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  619 bits (1597), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 326/425 (76%), Positives = 360/425 (84%), Gaps = 7/425 (1%)

Query: 29  MFLAFLTTRLCRRA----SWIFLAVLLAACSRPSIPTTHLAQDVYVWQRQWTPALRNALS 84
           M  AFL  R CRR     SW+ LA+LLAACSR   P   L QD Y+WQRQWTPALR ALS
Sbjct: 23  MPFAFLPERSCRRICRGLSWMLLALLLAACSRAPAPGARLPQDAYIWQRQWTPALRTALS 82

Query: 85  ASNAHVARWHVLAAELGASGRWIDIEPEAAVLADTGRPLLLTVRLNGQLARFDGAAIQAH 144
           AS+AHVARWHVLAAELGASGRWIDI+P+   LA+TGRPLL+TVR+NGQLAR D AAIQ H
Sbjct: 83  ASHAHVARWHVLAAELGASGRWIDIDPDVEALANTGRPLLMTVRINGQLARLDAAAIQDH 142

Query: 145 LLELLTAWRARGLQPAALEIDYDCATARLPDYTAFLQGLKSRIAPLSLAVTALPTWLASP 204
           LLE L+AWR RGLQPAALEIDYDCATARLP+Y AFL+ LK+R+APL LAVTALPTWL+SP
Sbjct: 143 LLERLSAWRRRGLQPAALEIDYDCATARLPEYIAFLRSLKARVAPLDLAVTALPTWLSSP 202

Query: 205 QLSALLAVADESTLQVHAVLDPRLGLFDAQRAQDWMQQYAVRTRHPWHVALPAYGSRVSW 264
           QL++LLAVADESTLQVHAVLDPRLGLFDA+ AQDW+ QYA RTR PWHVALPAYG+RVSW
Sbjct: 203 QLASLLAVADESTLQVHAVLDPRLGLFDARLAQDWLHQYAQRTRRPWHVALPAYGARVSW 262

Query: 265 DGQGRIAAVESERALLAGGVGRELMAEPRVMARFVAQLEAQAPAGLAGITWFRLPTGDDR 324
           D QGRIAAVESER LLAGG+G ELM +P+VMARFVAQL+A  PAG+AGITWFRLPTGDDR
Sbjct: 263 DAQGRIAAVESERPLLAGGLGNELMVDPQVMARFVAQLQASPPAGMAGITWFRLPTGDDR 322

Query: 325 RAWSLATWIAVLQRQPLKDGLTVRLVAAAGEPGAASDIRLDNAGNADAALPLRVRIGRRQ 384
           RAWSL+TWIAVL+ +PLK GL V+LVA  G     SDIRL+N GNAD +LPLRVRI  R 
Sbjct: 323 RAWSLSTWIAVLEGKPLKPGLQVQLVAGQGG-NTPSDIRLNNEGNADVSLPLRVRIKVRA 381

Query: 385 PE--QPGNACSGDGINGYTLENDAQGRYLRLEQAGLLRAGSSRSIGWLRCAAGVAAPDIT 442
            +    GN CSGDGINGYTLENDAQGRYLRL QAGLLRAG+SR+IGWLRCA G AAPDIT
Sbjct: 382 GDAASAGNVCSGDGINGYTLENDAQGRYLRLGQAGLLRAGASRTIGWLRCAEGGAAPDIT 441

Query: 443 LEMGS 447
           LEMGS
Sbjct: 442 LEMGS 446


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,614,873
Number of extensions: 73725
Number of successful extensions: 280
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,203,190
Effective search space: 431945210
Effective search space used: 431945210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)