BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3654.p
         (834 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313039|ref|YP_003777131.1| hypothetical protein Hsero_3745...  1270   0.0  

>gi|300313039|ref|YP_003777131.1| hypothetical protein Hsero_3745
           [Herbaspirillum seropedicae SmR1]
          Length = 826

 Score = 1270 bits (3286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/816 (80%), Positives = 720/816 (88%), Gaps = 1/816 (0%)

Query: 17  SHISRMKKIAYAASGLLVLGAATVVACGPDFPLQLLDDRAGTLRNTPNNSFAWEVAHLVT 76
           S + RMKK+AYAASGLLVLGAATVVACGPDFP+QLLDDR G LRNTP NSFAWE AHLVT
Sbjct: 7   SSMGRMKKLAYAASGLLVLGAATVVACGPDFPMQLLDDRVGALRNTPANSFAWEAAHLVT 66

Query: 77  PTDKLQADEGSGYEHNAARADDPRSLQMLERGQLDAAQWTALQAMRAAPDGQSAYAAGAA 136
           P DKLQADEGSGYE    + DDPRSL+M+E+G+LDAAQWTALQAMRAA DG+SAYAAGAA
Sbjct: 67  PADKLQADEGSGYEQAVGQPDDPRSLRMIEKGRLDAAQWTALQAMRAAADGESAYAAGAA 126

Query: 137 LPPAIRLYTAGAQDFRANALEAARQRFEAVLALPAPQARERAVWAAYMLGRLHAIEGRRE 196
           LPPAIRLYTA AQDFRANAL AARQRFEAVLALP  QA ERAVWAAYMLGRLHAIEGRRE
Sbjct: 127 LPPAIRLYTAAAQDFRANALAAARQRFEAVLALPPQQASERAVWAAYMLGRLHAIEGRRE 186

Query: 197 QAIASFMQSRALALAGAPDPLGLAVASYGEQARLLLVGEAGACNWSDFNEGHACGESIKP 256
           QAIASF ++RALA+AGA DP+GLAVASYGEQARL+LVGEAG+CNWSDFNEG  C +SI P
Sbjct: 187 QAIASFTKARALAVAGAADPMGLAVASYGEQARLMLVGEAGSCNWSDFNEGRDCAQSIAP 246

Query: 257 ADLKQAIHLYAEQAARGSLSAQSSLQALASWSLARSATSAELIDDAVAQQLLVAYALARV 316
           AD KQAIHLYAEQAARGS SAQSSL+ALA+W+L  +  SA LIDDAVAQ+LLVAYALAR+
Sbjct: 247 ADFKQAIHLYAEQAARGSASAQSSLEALAAWNLGNAERSAALIDDAVAQRLLVAYALARL 306

Query: 317 GDVVEGPQAGGGDYDPSAPTYGSSGYADAARSAKFKPNTMLVNLVDALKQRGLEHIAGAD 376
           GDV EGPQAGG DYDP+APT GSSGYADAARS   KP+ +LVNL+DALK+RGLE I GAD
Sbjct: 307 GDVGEGPQAGGYDYDPTAPTSGSSGYADAARSDTLKPSPILVNLIDALKRRGLEKIDGAD 366

Query: 377 RVAALAYRSGRYELAQALVDQQESALAWWVRAKLALRRGDNEAAVQAYARAAQAFPRNDA 436
           RVAALAYR+GRYELA +L  +Q++ALAWWVRAKLALRRGDNEAAVQAY RA QAFPRNDA
Sbjct: 367 RVAALAYRTGRYELAASLAGRQDTALAWWVRAKLALRRGDNEAAVQAYTRAVQAFPRNDA 426

Query: 437 SLEPGNLDLLVGEQGVLTLSRGQYVEALAQFHRAATQSARQNRGYYSASYGDYYNDLAYV 496
           SLEPGN +LL+GEQGVLTLSRGQYVEALAQFHRAA+++ARQ+   Y   YG YYNDLAYV
Sbjct: 427 SLEPGNANLLMGEQGVLTLSRGQYVEALAQFHRAASETARQSGNGYFGMYG-YYNDLAYV 485

Query: 497 AERVLSTDELKTYVDAHAPASPMPSPQAVQAKAAQQQGRPSLRWVALELAPLTVEDNLRQ 556
           AERVL+ DELKTYVDAHAPASPMP+P+AV     QQQGR S RW A+ L+ +TVEDNLRQ
Sbjct: 486 AERVLTVDELKTYVDAHAPASPMPAPEAVAKAVQQQQGRQSRRWAAVGLSAITVEDNLRQ 545

Query: 557 LLARRLVREGRVEEALPYFPDERDERFVQSSYDDQGRETPVTWRVRAKAREYGQALERAH 616
           LLARRLVREGRVE+AL YFPDERDERFVQSSYD +GRETP  WR+RAKAR+YG+ALER  
Sbjct: 546 LLARRLVREGRVEDALAYFPDERDERFVQSSYDAEGRETPDAWRLRAKARDYGRALERGQ 605

Query: 617 HAWRATSRAQGWYEAAVIARRQGMEIMGYEQGPDYAVYGGSYAGGAGRGVGLYLDETKPV 676
           HAWRA SRAQGWYEAA+IARRQGMEIMGYEQGPD+AVYGGSY GGAGRG G+Y DE++PV
Sbjct: 606 HAWRANSRAQGWYEAALIARRQGMEIMGYEQGPDFAVYGGSYPGGAGRGTGMYADESRPV 665

Query: 677 ADTPQARAQADLPGPLVTAGERQRYAASEAKPYQRFHYRAIAADYAMQAADELPARSQAF 736
            D PQARAQADLPGPLVT GERQRYAASEAKPY+RFHYR +AADY M+AAD LP RSQAF
Sbjct: 666 PDNPQARAQADLPGPLVTDGERQRYAASEAKPYKRFHYRDVAADYVMKAADALPPRSQAF 725

Query: 737 AAVLCQGVNFVADDPARAQPLYLRYVKQGAAVPFSADFGQNCVEPDFAAAARFPYRQAWR 796
           AAVLCQGVNFV  D  RA+ LY RYVK+GAAVPFSADFGQNCVEPDFAAAARFPY QAWR
Sbjct: 726 AAVLCQGVNFVYYDQPRAEQLYRRYVKEGAAVPFSADFGQNCVEPDFAAAARFPYVQAWR 785

Query: 797 ATRHWVGQHRAVSAALLLALVVGAGWGAAHWRRQRR 832
             R WV +HRAVSAALLLA +VG G+G A WRR+RR
Sbjct: 786 GARGWVARHRAVSAALLLAAMVGGGFGVAQWRRRRR 821


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,310,857
Number of extensions: 87851
Number of successful extensions: 389
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 1
Length of query: 834
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 741
Effective length of database: 1,179,515
Effective search space: 874020615
Effective search space used: 874020615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)