BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3651.p
         (424 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator o...   717   0.0  
gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911...    97   2e-21

>gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator of
           sigma subunit [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/424 (82%), Positives = 373/424 (87%), Gaps = 2/424 (0%)

Query: 1   VESHFSLTPVMGSKLFQPTAGALAVQVPVVQFDENNATVLEIFGQHKELVSLPVVEQQRP 60
           +ESHFSLTP  GSKLFQPTAGALAVQVPVVQFD+NNA VLEIF QHKELVSLPVVEQQRP
Sbjct: 1   MESHFSLTPATGSKLFQPTAGALAVQVPVVQFDQNNAAVLEIFDQHKELVSLPVVEQQRP 60

Query: 61  IGLISRHIFMSQMSKPYHRELYERKSCIAFMDKNPLIVEADTPIETLGALAVASGDKTLA 120
           IGLISRHIFMSQMSKPYHRELYERKSCIAFMDK+PLIV+ADTPIETLGALAVASGDKTLA
Sbjct: 61  IGLISRHIFMSQMSKPYHRELYERKSCIAFMDKDPLIVDADTPIETLGALAVASGDKTLA 120

Query: 121 DGFLIVEQGRLAGLGAGLALMRELVAMQEEKNRQVMQSIDYASVIQRAMLSTSRAAMSQA 180
           DGF+IVEQG+L GLG+GLALMRELV +Q EKNRQVMQSIDYASVIQRAMLS SRAAM  A
Sbjct: 121 DGFMIVEQGQLNGLGSGLALMRELVDLQVEKNRQVMQSIDYASVIQRAMLSASRAAMGAA 180

Query: 181 LADACLVWEPRDVVGGDFYHFEGHADGWFAAVGDCTGHGVPGAFLTLIASSSLKQALELH 240
           L DACL+WEPRDVVGGDFYHFE H  GWFAAV DCTGHGVPGAFLTLIASS+LKQALELH
Sbjct: 181 LQDACLIWEPRDVVGGDFYHFEEHPQGWFAAVADCTGHGVPGAFLTLIASSALKQALELH 240

Query: 241 GPHDPARLMREVNRSMKRVLGQHGQADKPSESDDGMDACFFWFDSTTRTLTSSSAKMPLF 300
           GP DPARLM+EVNRSMKRVLGQHG  DKPSESDDGMDACFFWFDS +RTLT ++AKM LF
Sbjct: 241 GPRDPARLMQEVNRSMKRVLGQHGAQDKPSESDDGMDACFFWFDSASRTLTCANAKMALF 300

Query: 301 LLVADGTEVLTVEGKRVGLGYVDTPEDMQWDNHSQVIEPGAMVFVCTDGVIDQIGGPKHI 360
           LL A   +V TVEGKRVGLGYVDTPEDMQW NH   +  G MVFVCTDG+IDQIGG KHI
Sbjct: 301 LLPAADEQVQTVEGKRVGLGYVDTPEDMQWTNHCLPVADGDMVFVCTDGIIDQIGGAKHI 360

Query: 361 AFGKQRLRRTLLEHGRLAMPALGRMVMDIHAHYQGSQRRRDDICFFAARPGGTSLQDSQH 420
           AFGKQRLRRTLLE+ RL +  LGR +MD+H  YQG+QRRRDDI FF AR GG     SQH
Sbjct: 361 AFGKQRLRRTLLEYRRLPLAELGRTLMDVHRDYQGAQRRRDDISFFGARIGGVF--SSQH 418

Query: 421 GMHA 424
            + A
Sbjct: 419 EVQA 422


>gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911
           [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 74/119 (62%)

Query: 35  NNATVLEIFGQHKELVSLPVVEQQRPIGLISRHIFMSQMSKPYHRELYERKSCIAFMDKN 94
           +N TV ++F    +L +LPVV    PIGLI+R+  + + ++ Y RELY +KSC  FMD N
Sbjct: 293 SNDTVYDMFVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGKKSCAFFMDPN 352

Query: 95  PLIVEADTPIETLGALAVASGDKTLADGFLIVEQGRLAGLGAGLALMRELVAMQEEKNR 153
           P++ E  T ++ L  L V +    L++GF+I ++G+  GLG G  L+RE+  MQ +  R
Sbjct: 353 PILTEQSTSLQDLSNLLVHAESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAAR 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,338,468
Number of extensions: 55733
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 2
Length of query: 424
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,203,190
Effective search space: 404271840
Effective search space used: 404271840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)