BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3640.p (579 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 819 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 565 e-162 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 525 e-150 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 498 e-142 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 490 e-139 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/579 (75%), Positives = 496/579 (85%), Gaps = 8/579 (1%) Query: 1 MKWFYDLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDIARNWLPSINSLSKIS 60 M WFY+LKIAHKLNAAFLVVL+F++GLGG S L+LA VN+S+TDIARNWLPSI++LSK+S Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 LALARSRSFDMQQLLTDDKKEEQASRERASKQMEILLKEMSIYGSLVSEPREKELFLEIQ 120 LALARSRSFDMQQLLT DK+EE+ASRERA KQM LLKE++ YG LVSEPREKEL+ EI+ Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 HNVADYKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEATEINRKGAMDSDD 180 N+A YK AHERM LF Q +KQ AHA+++++ST VYRKLQ+QI E +E+N KGA SD Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 QANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGDLRAHIAA 240 A+ +Y QA +AI+ L+ +C+ LA+ +SWWIARLVARPL +AVDIARQVAAGDL A I Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIP- 239 Query: 241 NTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTEQQAGAL 300 +DETGQLL+ALR+MN NL +IV+EVR GTDTI+TAS EIATGNM+LSSRTEQQAGAL Sbjct: 240 TAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGAL 299 Query: 301 EETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAINDSSRRIV 360 EETASAMEELTSTVRQNSDNARQANQLAV+ASEVAQAGG VVGKVV TM AINDSSR+IV Sbjct: 300 EETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIV 359 Query: 361 DIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKTLID 420 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA EIK LID Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALID 419 Query: 421 DSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNAVAQMDE 480 DSV KV+ GSKLVDEAGQTMNEVVASVKRVSDIVAEITAA AEQTQGIEQINNAV QMDE Sbjct: 420 DSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDE 479 Query: 481 NTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQAPLVSNTANTAAAHNKAARNV 540 NTQQNAALVEQAAAAAKALQEQA RLS+TVSVF LDA P+V + AAA + R++ Sbjct: 480 NTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLDAQHVPVV---VSRAAATAQPERDI 536 Query: 541 LPRHPAVAATRTKIIARPAQAAPSKRQHDSADHGDWEQF 579 P PA+A +R+K++ARPA + S SA+ GDWEQF Sbjct: 537 TPARPALAQSRSKVMARPAHSNTSA----SAEQGDWEQF 571 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 565 bits (1457), Expect = e-162, Method: Compositional matrix adjust. Identities = 330/588 (56%), Positives = 422/588 (71%), Gaps = 18/588 (3%) Query: 1 MKWFYDLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDIARNWLPSINSLSKIS 60 MKWFYDL+I+ KL FLVV+ + LG SI QL QVN ++T+I+ NWLPSI +L+++ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 LALARSRSFDMQQLLTDDKKEEQASRERASKQMEILLKEMSIYGSLVSEPREKELFLEIQ 120 LA++R RSF++Q +L D KE + QM L + Y + +SEP EK ++ E++ Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 HNVADYKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEATEINRKGAMDSDD 180 +A + S H+++ L QGK +EA + ST YR QI++ +N KGA S+ Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 QANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGDLRAHIAA 240 QA+ +Y QARL I+ +A+C+ LA+L++ W++RL+ARPL AV +A++VA GDL I Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 NTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTEQQAGAL 300 KDETGQLL AL+ MND+L IV +VR+GT TI+TASTEIA+GN++LSSRTE+QA +L Sbjct: 241 -AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSL 299 Query: 301 EETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAINDSSRRIV 360 EETASAMEELTSTV+QN+DNARQANQLAVSASEVA GG VV +VV TMG+IN SSR+I Sbjct: 300 EETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIA 359 Query: 361 DIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKTLID 420 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AA+EIK LI+ Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIE 419 Query: 421 DSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNAVAQMDE 480 SV +V+ GSKLV+ AG TM+EVV SV+RV+DIV EI++AS EQ++GIEQ+N A+AQMDE Sbjct: 420 GSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDE 479 Query: 481 NTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLD------ASQAPL-VSNTANTAAA- 532 TQQNAALVE+AAAAA++LQEQA L+QTV F L+ AS+ P+ ++ A TAA Sbjct: 480 VTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRAASVARTAAVR 539 Query: 533 HNKAARNVLPRHPAVAATRTKIIAR-PAQAAPSKRQHDSADHGDWEQF 579 H A R + A + +R P AA D G WEQF Sbjct: 540 HAPATRPAATLAASAAPAKPASGSRLPGGAAE--------DGGSWEQF 579 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 525 bits (1353), Expect = e-150, Method: Compositional matrix adjust. Identities = 298/515 (57%), Positives = 386/515 (74%), Gaps = 1/515 (0%) Query: 1 MKWFYDLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDIARNWLPSINSLSKIS 60 M WF +LKIA KL +F V++ V LG +I +L VNQ++TD+A NWLP+I + I Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 LALARSRSFDMQQLLTDDKKEEQASRERASKQMEILLKEMSIYGSLVSEPREKELFLEIQ 120 +L R R ++Q + E + + + +++IL K+ + Y + +SE EK L+ + Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 HNVADYKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEATEINRKGAMDSDD 180 + A Y + + ++ A+GK++EA A+ S +R + + ++E ++N G+ SDD Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 QANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGDLRAHIAA 240 A QVY+ A L I+GL+A+ + +AL ++ +AR V+RPL AV +A +VA GDL I A Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 NTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTEQQAGAL 300 TS DETG L+ +LR MND+L+ IV EVR GTDTI+TAS EIATGN++LSSRTE+QAG+L Sbjct: 241 -TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSL 299 Query: 301 EETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAINDSSRRIV 360 EETASAMEELT+TV+QN+DNARQANQLA SAS++A GG VVG+VV TM I +SS RI Sbjct: 300 EETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIA 359 Query: 361 DIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKTLID 420 DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA+EIK LID Sbjct: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 419 Query: 421 DSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNAVAQMDE 480 DSV KV AGS+LV+ AG TM+EVVASV+RV+D+VAEI+AAS EQ+ GIE+IN A+ QMDE Sbjct: 420 DSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDE 479 Query: 481 NTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHL 515 TQQNAALVE+AAAAA++LQ+QAARLSQ VSVF L Sbjct: 480 VTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 498 bits (1281), Expect = e-142, Method: Compositional matrix adjust. Identities = 298/581 (51%), Positives = 392/581 (67%), Gaps = 16/581 (2%) Query: 1 MKWFYDLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDIARNWLPSINSLSKIS 60 M WFY+ +IA KL AF VLL GLG SI+QL +VNQ+AT++A NWLPSI SL+ + Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 LALARSRSFDMQQLLTD-DKKEEQASRERASKQMEILLKEMSIYGSLVSEPREKELFLEI 119 +AL+R R+ Q L D D+K+ A +K +E L + Y +SEP EK LF + Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 120 QHNVADYKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEATEINRKGAMDSD 179 + + + H GK EA +L + Y L + +++ ++N G++ S Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 180 DQANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGDLRAHIA 239 A Y QA++ +V ++ + L ++ +IAR++A PL A + A +AAGDL A I Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 240 ANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTEQQAGA 299 A S DETGQL AL MN +LR IV +VR GTD I+TAS +I++GN++LSSRTE+QA + Sbjct: 241 AR-SDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASS 299 Query: 300 LEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAINDSSRRI 359 LEETASAMEELTSTVRQN++NARQANQLA+SAS +A+ GG+VV +V+ TMG+I+ SS++I Sbjct: 300 LEETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKI 359 Query: 360 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKTLI 419 VDII+VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EIKTLI Sbjct: 360 VDIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLI 419 Query: 420 DDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNAVAQMD 479 D+SV +V GS LV +AG T++EVV+SV+RV+D+++EI+AAS EQTQGIEQ+N A+ QMD Sbjct: 420 DNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMD 479 Query: 480 ENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQAPLVSNTANTAAAHNKAARN 539 E TQQNAALVE+AA+A+++L QA RLS+ V VF L + A AA Sbjct: 480 EVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPGA----ARQQVPEVAVVATAAPA 535 Query: 540 VLPRHPAVA-ATRTKIIARPAQAAPSKRQHDSADHGDWEQF 579 PR PAVA AT T A P ++ WE F Sbjct: 536 YTPRRPAVAGATSTATPALAVAQGPDEQ---------WETF 567 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 490 bits (1261), Expect = e-139, Method: Compositional matrix adjust. Identities = 278/517 (53%), Positives = 380/517 (73%), Gaps = 3/517 (0%) Query: 1 MKWFYDLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDIARNWLPSINSLSKIS 60 M WFY+L IA KL +F VV+ + G +I +L QVN+++ +I W+P++++ ++ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 LALARSRSFDMQQLLTDDKKEEQASRERASK-QMEILLKEMSIYGSLVSEPREKELFLEI 119 +L R +++ L+T +E+A+ +A K +++ L ++ +I+ +SEP+EKE + + Sbjct: 61 GSLPPLRLNELE-LVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQF 119 Query: 120 QHNVADYKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKLQDQINEATEINRKGAMDSD 179 N+ Y E++ ++ A + E A+ + S +YR + ++ +IN G+ +D Sbjct: 120 LKNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQAD 179 Query: 180 DQANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGDLRAHIA 239 ++A+ V++ A+ IVGL+A+ + +A L+++ +A V+RPL AV IA++VA GDL I Sbjct: 180 EEASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIR 239 Query: 240 ANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTEQQAGA 299 +DETG L++ALR MN++LRDIV EVR GTDTI+TAS EIA GN++LS+RTEQQAG+ Sbjct: 240 P-AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGS 298 Query: 300 LEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAINDSSRRI 359 LEETASAMEELTSTV QN+DNARQANQLA +AS++A GG+VVG+VV TM I +SSRRI Sbjct: 299 LEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRI 358 Query: 360 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKTLI 419 DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AA+EIK LI Sbjct: 359 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELI 418 Query: 420 DDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNAVAQMD 479 DDSV KV AGS LV+ AG TM EVVASV+RV+D+VAEI+AA+ EQ+ GI ++N A+ QMD Sbjct: 419 DDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMD 478 Query: 480 ENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLD 516 E TQQNAALVEQAAAAA +L+ QA+ L+ V F LD Sbjct: 479 ETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKLD 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.124 0.325 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,161,990 Number of extensions: 37169 Number of successful extensions: 618 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 70 Length of query: 579 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 489 Effective length of database: 1,193,720 Effective search space: 583729080 Effective search space used: 583729080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)