BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3639.p (747 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729... 1125 0.0 gi|300313029|ref|YP_003777121.1| two component hybrid sensor his... 233 6e-62 gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kin... 209 7e-55 gi|300311948|ref|YP_003776040.1| sensor histidine kinase/respons... 189 6e-49 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 167 3e-42 >gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1] Length = 765 Score = 1125 bits (2909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 568/767 (74%), Positives = 643/767 (83%), Gaps = 22/767 (2%) Query: 1 MTTPTPTNGTQPMQPRIRKSAVTIGALLLGLLAVTVIVSGTLLYRASLNDWRNDLSTLST 60 M P P + Q PR+R SA+T+GALLL LL VTVIVSGTLLYRASLNDWRNDLSTLST Sbjct: 1 MNEPLPND--QRKTPRMRISALTVGALLLILLTVTVIVSGTLLYRASLNDWRNDLSTLST 58 Query: 61 VLAESTAQTMSSARLVIDSIQSDIEMANINDEQQLRQHVGSAEFSQTMREKIRGLPFISG 120 VLAE+TAQTMSSARLVIDSIQ+DIE AN D+QQL++HVGS EFSQ MREKIRGLPFISG Sbjct: 59 VLAENTAQTMSSARLVIDSIQADIEQANPTDQQQLQRHVGSVEFSQIMREKIRGLPFISG 118 Query: 121 VGVSNAEGRILALSRSHPAPPLDLTDRDYYQHHNQSISTADFLGETVNSRAGGVPTFYLS 180 +GV+NAEGRILALSR +PAPP+DLTDRDYY HH S STADF+GETV SRAGGVPTFY+S Sbjct: 119 IGVANAEGRILALSRVYPAPPIDLTDRDYYLHHRSSDSTADFVGETVLSRAGGVPTFYVS 178 Query: 181 RRVNDRQGRMLAIIVVGLPCSFFEEFFKAITREKPFSILLSRKDEKVLISTALVHDISAQ 240 RRVNDRQGR+LAIIV+GLPC+FFE FF +TR+KPFSI+L+RKD K L ST L+ + + Sbjct: 179 RRVNDRQGRLLAIIVIGLPCAFFETFFDNVTRDKPFSIVLARKDGKTLTSTDLLPEQGQR 238 Query: 241 RDLTPLAELHPQRPADNDGRTPYFFMQQHWLGIHRPVRNTQMFLEIGVTDRVYFGEWLES 300 R +TPLA+LHP PAD++GR + FMQ HWLGIHRPVRN M+LEIGVTD VYFGEW+ES Sbjct: 239 RSITPLAQLHPSMPADDEGRQSHVFMQSHWLGIHRPVRNWPMYLEIGVTDEVYFGEWMES 298 Query: 301 MYPLMMVAAISLVGLIGGFVMALRQMRRREQDAILAVELKEEAVKANQAKSRFLAMVSHE 360 MYPLM+VAAISLVGLIGGFV+ RQ+RRRE+DA+LA LKEEA AN+AKS FLAMVSHE Sbjct: 299 MYPLMLVAAISLVGLIGGFVLTWRQVRRREEDALLATRLKEEADHANEAKSHFLAMVSHE 358 Query: 361 IRTPMNGILGLSELLMESDLTIKQRHYADSIHNASGGLVRIINDILDFSKIESGKLDLEG 420 IRTPMNGILGLSELLMES L+ KQR YADSIH A+GGLVRIINDILDFSKIESGKLDLE Sbjct: 359 IRTPMNGILGLSELLMESGLSSKQRDYADSIHGATGGLVRIINDILDFSKIESGKLDLEM 418 Query: 421 VAFHPVRLVRELVELYRPSMHNKDVQLDVRIDCEEALCVVGDPSRLKQVLGNLLSNAIKF 480 VAFHPVRLV+EL +LYRPS+ KDVQ D+ +DC E L VVGDP+RLKQVLGNLLSNAIKF Sbjct: 419 VAFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKF 478 Query: 481 TQAGYVRLSMSAQQEQVTPARWRLFFAISDSGIGITPEALTQLFQPFTQADSSISRRFGG 540 TQAG+V+LSMSA+Q++ P+RWRLFFAI+D+GIGI+PEAL QLF+PF QADSSISRRFGG Sbjct: 479 TQAGHVQLSMSARQDESGPSRWRLFFAITDTGIGISPEALQQLFRPFAQADSSISRRFGG 538 Query: 541 TGLGLAISKNLVELMGGSISCQSIPGESTKFSFDIVCPEGVEPVTAPATHSVPPPAVTLD 600 TGLGLAISKNLVELMGG+I+CQSIPGEST+FSF+I+CPE P P + + P T Sbjct: 539 TGLGLAISKNLVELMGGTIACQSIPGESTRFSFEILCPEASTPAPEPVSEAAAPAPATAL 598 Query: 601 KLSTP-------------PPTPAPTPVVGAASS-------LSGARILVAEDTEINRQLLR 640 + P PP AP P +S L+GARIL+AEDTEINRQLLR Sbjct: 599 ATTAPALPPAAEAPGTLMPPDNAPQPPSNVDASATVLPSLLAGARILMAEDTEINRQLLR 658 Query: 641 ILLARRGCILQEVENGQLALEAVRNGNYDLILMDCMMPIMDGYQATTAIRALEREQGRPR 700 ILLAR+GCILQEVENG A+EA+R G+YDL+LMDCMMPIMDGYQAT IRA E +G PR Sbjct: 659 ILLARKGCILQEVENGLQAVEAIRTGHYDLVLMDCMMPIMDGYQATAEIRAHEAARGLPR 718 Query: 701 TPIVALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLMNTVEKWLQKT 747 TPI+ALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLM TVEKWLQK+ Sbjct: 719 TPIIALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLMQTVEKWLQKS 765 >gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1524 Score = 233 bits (593), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 157/402 (39%), Positives = 228/402 (56%), Gaps = 14/402 (3%) Query: 337 VELKEEAVKANQAKSRFLAMVSHEIRTPMNGILGLSELLMESDLTIKQRHYADSIHNASG 396 V+ + +A +AN AKS FLA VSHEIRTPMNG+LG+ +LL + Q+ Y D ++ Sbjct: 884 VDARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQLLQRTQPLPAQQDYLDKAEISAK 943 Query: 397 GLVRIINDILDFSKIESGKLDLEGVAFHPVRLVRELVELYRPSMHNKDVQLDVRIDCEEA 456 L+ ++ND+LDFSK+++ +L L+ AF R L + S V L + +D + Sbjct: 944 SLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIALDPQLP 1003 Query: 457 LCVVGDPSRLKQVLGNLLSNAIKFTQAGYVRLSMSAQQEQVTPARWR---LFFAISDSGI 513 +VGD RL+QVL NL NA+KFT G++ + + ++ P R L +SD+GI Sbjct: 1004 RRLVGDAHRLQQVLVNLTGNALKFTHQGHIDVHFT----RLDPLPGRTVALRVEVSDTGI 1059 Query: 514 GITPEALTQLFQPFTQADSSISRRFGGTGLGLAISKNLVELMGGSISCQSIPGESTKFSF 573 GI + L +F FTQA++S +RR+GGTGLGLAISK+LV LMGG + S PG ++F F Sbjct: 1060 GIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSRFWF 1119 Query: 574 DIVCPEGVEPVTAPATHSVPPPAVTLDKLSTPPPTPAPTPVVGA--ASSLSGARILVAED 631 D+ + V PA L S + AP A A L G +IL+ ED Sbjct: 1120 DLQLAVDDDSVLGPAAADDAARPQPLQAASHTAGSRAPETARSAPDAQCLQGVQILLVED 1179 Query: 632 TEINRQLLRILLARRGCILQEVENGQL--ALEAVRNGNYDLILMDCMMPIMDGYQATTAI 689 +NRQ+ LLA G + ++G + A+ ++DL+LMD MP MDG +AT I Sbjct: 1180 NPVNRQVASELLALSGAQVTCADSGSMGVAMACDPARHFDLVLMDLQMPGMDGIEATRRI 1239 Query: 690 RALEREQGRPRTPIVALTASAIEGDRQRCLDAGMDDYLSKPF 731 R +G PI+A+TA+A D+QRC++AGM +++KP Sbjct: 1240 RGQYELRG---LPILAMTANASPEDKQRCIEAGMAGHIAKPI 1278 >gi|300310566|ref|YP_003774658.1| Hpt sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 723 Score = 209 bits (532), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 118/275 (42%), Positives = 165/275 (60%), Gaps = 6/275 (2%) Query: 323 LRQMRRREQDAILAVELKEEAVKANQAKSRFLAMVSHEIRTPMNGILGLSELLMESDLTI 382 LR +R + A V+ KE A A + FL+ +SHEIRTPMN +LG++ LL + L Sbjct: 60 LRLLRENARTAEKLVQAKEAADHAMLTRGAFLSTMSHEIRTPMNAVLGMAGLLRSTRLDT 119 Query: 383 KQRHYADSIHNASGGLVRIINDILDFSKIESGKLDLEGVAFHPVRLVRELVELYRPSMHN 442 +Q +A +I +++ L+ I+ND+LDFSKI+ GK+D+ V F ++V E Sbjct: 120 QQAEFAKAIEDSAHALLGIVNDVLDFSKIDVGKMDIAVVEFDLAKVVEASAEALSFKARE 179 Query: 443 KDVQLDVRIDCEEALCVVGDPSRLKQVLGNLLSNAIKFTQAGYVRLSMSAQQEQVTPARW 502 K V+L +D +VGDP R++Q+L NLL NA+KFT AG V L + Q QVT Sbjct: 180 KRVRLLAHLDSRLPPRLVGDPGRIRQILLNLLGNALKFTHAGEVLLRV--QALQVTSDHC 237 Query: 503 RLFFAISDSGIGITPEALTQLFQPFTQADSSISRRFGGTGLGLAISKNLVELMGGSISCQ 562 R+ F + DSGIG+ + L +LF PF QADSS++R++GGTGLGL+I K LVELMGGSI + Sbjct: 238 RVRFEVRDSGIGMDEDTLRRLFSPFAQADSSVTRQYGGTGLGLSICKRLVELMGGSIGVE 297 Query: 563 SIPGESTKFSFDIVCPEGVEPVTAPATHSVPPPAV 597 S G + F F++ G+ T P PPA Sbjct: 298 SALGTGSCFWFEL----GIPVTTGPGMIRSEPPAA 328 Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 3/124 (2%) Query: 622 SGAR-ILVAEDTEINRQLLRILLARRGCILQEVENGQLALEAVRNGNYDLILMDCMMPIM 680 SG R IL+ ED +N+++ L G NG ALE + Y L+LMDC MP++ Sbjct: 473 SGQRDILLVEDNVMNQKVAVYQLNAMGYAADIAANGLEALERLARHRYALVLMDCQMPLL 532 Query: 681 DGYQATTAIRALEREQGRPRTPIVALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLMNTV 740 DGY+ T IR ++ E T IVA+TA+A+ GDR+RCL+AGMDDYL+KP + L + Sbjct: 533 DGYETTRRIRRMQGELA--HTTIVAMTANAMAGDRERCLEAGMDDYLTKPLLRSQLSAML 590 Query: 741 EKWL 744 +L Sbjct: 591 AHYL 594 >gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 189 bits (481), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 137/410 (33%), Positives = 211/410 (51%), Gaps = 41/410 (10%) Query: 340 KEEAVKANQAKSRFLAMVSHEIRTPMNGILGLSELLMESDLTI--KQRHYADSIHNASGG 397 KE A AN AKSRF+A +SHE+RTP+N ILG +++L D TI ++ I + Sbjct: 678 KEAAESANLAKSRFVAGMSHELRTPLNSILGYAQIL-HVDATIPPARKDAIGVIRRSGEH 736 Query: 398 LVRIINDILDFSKIESGKLDLEGVAFHPVRLVRELVELYRPSMHNKDVQLDVRIDCEEAL 457 L+ +I+ +LD +KIE+GK+ L + ++V ++ P K L R D L Sbjct: 737 LLSLIDGLLDIAKIEAGKMRLASDELALEAFLEQIVGMFAPQAEQKG--LHFRFDKSGRL 794 Query: 458 --CVVGDPSRLKQVLGNLLSNAIKFTQAGYVRLSMSAQQEQVTPARWRLFFAISDSGIGI 515 V D RL+Q+L NLL NA+KFT G V L + +E +F + D+GIGI Sbjct: 795 PQIVHADQKRLRQILINLLGNAVKFTDHGGVTLRLRYAREIA-------YFDVIDTGIGI 847 Query: 516 TPEALTQLFQPFTQADSSISRRFGGTGLGLAISKNLVELMGGSISCQSIPGESTKFSFDI 575 + ++F PF ++ ++ R GTGLGLAIS+ LV +MGG +S QS G+ + F I Sbjct: 848 ADDDRERIFLPFERSSAANLREDIGTGLGLAISRMLVHIMGGELSVQSQVGQGSSFHLKI 907 Query: 576 VCPEGVEPVTAPATHSVPPPAVTLDKLSTPPPTPAPTPVVGAASSLSGARILVAEDTEIN 635 PE H VP P + L+ + P+ ILV +D Sbjct: 908 YLPE---------VH-VPRPRIKLEDQMSGYAGPS-------------RHILVVDDQASQ 944 Query: 636 RQLLRILLARRGCILQEVENGQLALEAVRNGNYDLILMDCMMPIMDGYQATTAIRALERE 695 R+LL+ +L G + E ++G +E + + DL+L+D MP MDG+ AIRA Sbjct: 945 RRLLKDMLMPLGFTVSEADSGLACMETLGHALPDLVLLDIAMPQMDGWSVARAIRA---- 1000 Query: 696 QGRPRTPIVALTASAIEGDRQRCLDAGMDDYLSKPFTQVGLMNTVEKWLQ 745 +G + PI+ ++A+A E +R ++D++ KP + L+ + + LQ Sbjct: 1001 RGLAQLPILLVSANAFENLHERNEPPLVNDFVVKPVSYHELLGKIRQHLQ 1050 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 167 bits (423), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 100/246 (40%), Positives = 148/246 (60%), Gaps = 11/246 (4%) Query: 334 ILAVELKEEAVKANQAKSRFLAMVSHEIRTPMNGILGLSELLMES---DLTIKQRHYADS 390 ++ VE E +ANQ KS FLA +SHE+RTP+N L L++LL ++ +L+ +Q +A + Sbjct: 459 VVLVEKATELERANQYKSEFLANMSHELRTPLNSTLILAKLLADNKQGNLSDEQVRFAQT 518 Query: 391 IHNASGGLVRIINDILDFSKIESGKLDLEGVAFHPVRLVRELVELYRPSMHNKDVQLDVR 450 I +A L+ +INDILD SK+E+GKLD+ +F +L EL + + K + V Sbjct: 519 ISSAGNDLLALINDILDLSKMEAGKLDIVPESFPLTKLADELSASFAITAQQKGLGFKVE 578 Query: 451 IDCEEALCVVGDPSRLKQVLGNLLSNAIKFTQAGYVRLSMSAQQEQVTP-ARWRLFFAIS 509 ++ + D RL Q+L NLLSNAIKFT+ G V L ++ P A R+ FA+ Sbjct: 579 VEPGVPQRMETDIQRLGQILKNLLSNAIKFTEKGEVSL-------RIYPDAGGRIAFAVR 631 Query: 510 DSGIGITPEALTQLFQPFTQADSSISRRFGGTGLGLAISKNLVELMGGSISCQSIPGEST 569 D+GIGI + +F+ F QAD S R++GGTGLGL+IS++L L+GG I S GE + Sbjct: 632 DTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTGLGLSISRDLAHLLGGDIRVTSRLGEGS 691 Query: 570 KFSFDI 575 F+ + Sbjct: 692 IFTLSL 697 Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 9/132 (6%) Query: 621 LSGARILVAEDTEINRQLLRILLARRGCILQEVENGQLALEAVRNGN------YDLILMD 674 G RILV ED N L +L +G ++ NG+ AL+A++ DL+LMD Sbjct: 1032 FEGRRILVVEDDVRNIFALSSVLEPKGMKVEIARNGREALQALQRSQDKPDAPIDLVLMD 1091 Query: 675 CMMPIMDGYQATTAIRALEREQGRPRTPIVALTASAIEGDRQRCLDAGMDDYLSKPFTQV 734 MMP MDG TA+R + ++ R PI+ALTA A++ D+++CL AG +DY++KP Sbjct: 1092 IMMPEMDGL---TAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVE 1148 Query: 735 GLMNTVEKWLQK 746 L++ V W+ K Sbjct: 1149 KLLSLVRVWMPK 1160 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,145,501 Number of extensions: 85063 Number of successful extensions: 559 Number of sequences better than 1.0e-08: 58 Number of HSP's gapped: 505 Number of HSP's successfully gapped: 60 Length of query: 747 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 655 Effective length of database: 1,184,250 Effective search space: 775683750 Effective search space used: 775683750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)