BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3634.p
         (411 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313019|ref|YP_003777111.1| sodium:galactoside symporter pr...   561   e-161

>gi|300313019|ref|YP_003777111.1| sodium:galactoside symporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  561 bits (1446), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 319/403 (79%), Positives = 346/403 (85%)

Query: 6   ATRWSNAAYGLLGAPLAMAALPLFVQIPAYYASHVGVALAPLGWVLFAARLLDMLQDPLF 65
           A R  +AAYGLLGAPLAMAALPLFVQIPAYYASHVG+ALAPLGWVLF ARLLDMLQDP+F
Sbjct: 5   ARRGQDAAYGLLGAPLAMAALPLFVQIPAYYASHVGLALAPLGWVLFGARLLDMLQDPVF 64

Query: 66  GHMLDRSAQRQKRWMGMAGVVLALAFICLWKPPDPPEMAMPWLVAMLVLAYGAHSMLSIA 125
           GH+LDRSAQRQKRWM MAG VLA+AF+CLWKPP  P+ AM WLVAMLVLAYGAHSMLSIA
Sbjct: 65  GHLLDRSAQRQKRWMAMAGAVLAVAFVCLWKPPHDPQAAMLWLVAMLVLAYGAHSMLSIA 124

Query: 126 YLSWGSRLPEQGMHAVPWREGAGLAGVIVASVVPVGILAADPARVDERITLYCLFFAAML 185
           YLSW SRLPE+G+ AV WRE AGLAGVIVASV+P  ILAA+ +++D RIT YC  FAA+L
Sbjct: 125 YLSWASRLPEKGLRAVAWREAAGLAGVIVASVIPAAILAAEASQIDARITFYCAGFAALL 184

Query: 186 GLALLLLLHQPAPVMVAQQQPWREALQGLWRNRAFRALLPPYLLNALSAAIPATLALFFI 245
           GLALL+LL Q  P   A    W+ AL+GLW   AFR LLPPYLLNALSAAI ATLALFFI
Sbjct: 185 GLALLVLLRQNPPPPQADGHHWKSALRGLWETPAFRTLLPPYLLNALSAAIAATLALFFI 244

Query: 246 EDQLQQRALAGLFLAAYFGAAALGLPLWSRLARRVGPVACWRLAMLLSMAGFVGAVWLGP 305
           EDQLQQ  LAGLFLAAYFGAAALGLPLW  L+RRVG VACWR AMLLS+AGF+GA  LGP
Sbjct: 245 EDQLQQGRLAGLFLAAYFGAAALGLPLWGALSRRVGAVACWRYAMLLSVAGFIGAALLGP 304

Query: 306 GDKLAFLLVCLATGAALGADLLLPPVLLARVVTQAASVGAAFGILTMLGKLALALAGVAL 365
           GD+LAFL VCLATGAALGADLLLPPVLLAR V QA +VG AFGILTMLGKLALAL+G+AL
Sbjct: 305 GDRLAFLAVCLATGAALGADLLLPPVLLARSVRQAQAVGVAFGILTMLGKLALALSGIAL 364

Query: 366 PLLAALDYHPGQGPSSSLPLVYAALPCVLKLAALLALGRYGRQ 408
           PLLAALDY PGQGPS SLPLVYA LPC+LKL A   LGRYGR+
Sbjct: 365 PLLAALDYRPGQGPSVSLPLVYALLPCLLKLLAWQVLGRYGRR 407


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,052,890
Number of extensions: 37483
Number of successful extensions: 228
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 323
Effective length of database: 1,203,190
Effective search space: 388630370
Effective search space used: 388630370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)