BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3633.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313018|ref|YP_003777110.1| hypothetical protein Hsero_3724...   264   3e-72

>gi|300313018|ref|YP_003777110.1| hypothetical protein Hsero_3724
           [Herbaspirillum seropedicae SmR1]
          Length = 193

 Score =  264 bits (675), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/157 (82%), Positives = 137/157 (87%)

Query: 37  AHATQPWREALPPVQSIGSGSMTWLGFRIYHATLWAPQRPLEENQPFALQLDYKVRISRD 96
            HA   WREALP  Q IGSG+MTWLGFRIY ATLWA QRPL+ +QPFALQLDYKV+ISRD
Sbjct: 37  GHAAASWREALPAAQPIGSGTMTWLGFRIYQATLWARQRPLDPSQPFALQLDYKVKISRD 96

Query: 97  KLASTSIEEIQRMSAAPIAGPTLARWKNELGRAFIDVADGDELVGVYLPQRGMRLYDRDK 156
           KLASTS+EEIQRMS  PIA  TLARWK EL RAF+DVADGDELVG+YLP RGMRLYDRDK
Sbjct: 97  KLASTSVEEIQRMSPTPIAAATLARWKEELVRAFVDVADGDELVGLYLPGRGMRLYDRDK 156

Query: 157 LLAEIADPELARAFFNIWLGQPSRDENLRRRLLGETP 193
            LAEIADPELA+AFFNIWLGQPSRDE LRRRLLGE P
Sbjct: 157 QLAEIADPELAKAFFNIWLGQPSRDEGLRRRLLGENP 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 586,135
Number of extensions: 22374
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)