BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3632.p (305 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313017|ref|YP_003777109.1| LysR family transcription regul... 514 e-147 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 225 3e-60 gi|300311458|ref|YP_003775550.1| LysR family transcription regul... 194 7e-51 gi|300312196|ref|YP_003776288.1| LysR family transcription regul... 192 3e-50 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 188 5e-49 >gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 514 bits (1323), Expect = e-147, Method: Compositional matrix adjust. Identities = 256/305 (83%), Positives = 282/305 (92%) Query: 1 VDRWMQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 +DRW QFELFVQVAELGSLSRAAEALG+SNAAASR+LAALE+RLGARLVERSTRRLGLS+ Sbjct: 1 MDRWSQFELFVQVAELGSLSRAAEALGLSNAAASRALAALEQRLGARLVERSTRRLGLSR 60 Query: 61 SGEAFYRQCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 +GE FYR CKAALTQMKEAE+ VNA S APSG LR+TSSLSFCMKHISPLLPRFH+ YP+ Sbjct: 61 AGEDFYRHCKAALTQMKEAEQQVNAASAAPSGTLRITSSLSFCMKHISPLLPRFHQRYPE 120 Query: 121 ITLDVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPR 180 + L+V+AANRY+DLLDS ID+AIRTREFEPD+NIAVRRLA+TRRILAAAPGYLAARG PR Sbjct: 121 VRLEVIAANRYMDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPR 180 Query: 181 TLEQLSGHDLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILI 240 TL+ L+ HDLLVYSH+ PN L + RDGSQ +L+I +LMQSNDGQIIRAAALEGLGILI Sbjct: 181 TLDDLAQHDLLVYSHAKEPNRLHLSGRDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILI 240 Query: 241 QPNYIIYDDVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQHFAEMDYE 300 QPNYIIYDD+VAGRLVPVLDEWDLPRL INIAYQGRKHLPA+VRVFIDFLVQHF EMDYE Sbjct: 241 QPNYIIYDDIVAGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFLVQHFEEMDYE 300 Query: 301 RKWTR 305 RKWTR Sbjct: 301 RKWTR 305 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 225 bits (574), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 114/299 (38%), Positives = 190/299 (63%), Gaps = 2/299 (0%) Query: 1 VDRWMQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 +++ + E F+ VA+LGS +AAEALG+S AA SR++ LE RLG+RL++R+TRRL L++ Sbjct: 1 MNKLREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTE 60 Query: 61 SGEAFYRQCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 +G + +CK + ++EA++L+++ S P+GLLR+ + L+F + H++PL P F +P+ Sbjct: 61 AGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPE 120 Query: 121 ITLDVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPR 180 I+LD+ ++R VD++D G D+AIR DS + R+L ST + A+P YL A G P Sbjct: 121 ISLDITLSDRIVDIIDEGYDMAIRIARLS-DSTLVHRKLTSTSLHVCASPAYLDAHGTPA 179 Query: 181 TLEQLSGHDLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILI 240 +L+ H + YS++ + + +F +G S+ + + + N+G AAL G+GI Sbjct: 180 HPHELAQHQTISYSYNQSKDEWQFNGPEGP-VSVRVSSRLHVNNGDSCVQAALGGIGITR 238 Query: 241 QPNYIIYDDVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQHFAEMDY 299 QP ++I + +G+LV +L ++ P L I Y R HLPAK+R +DFL + FA++ + Sbjct: 239 QPTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAFAQVHW 297 >gi|300311458|ref|YP_003775550.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 194 bits (493), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 176/294 (59%), Gaps = 1/294 (0%) Query: 1 VDRWMQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 +DR +F +V E GS RAAE L +SNA A+R +A LE LG RL+ RSTRRL L++ Sbjct: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 Query: 61 SGEAFYRQCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 +G+A+ + + L ++ +AE LV+ + P+G L + + F + +L + + YP+ Sbjct: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYCNAGFGQSQLGEMLSAYSQAYPE 120 Query: 121 ITLDVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPR 180 + LD+ + R +DL++ GID+ + + D+++ VR+L R IL +P Y+A +G P Sbjct: 121 VALDISLSERSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCTSPAYIARQGAPE 180 Query: 181 TLEQLSGHDLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILI 240 E LS H+ L +SH + + +G + I + + SN G ++R AL G+GI++ Sbjct: 181 QPEDLSRHNCLNFSHEYLRHHWH-VNTNGGVLDVPIVSKVVSNSGVLLRDLALAGMGIVL 239 Query: 241 QPNYIIYDDVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQHF 294 +P+Y + DD+ +GRLV VL +D+ ++++++ Y R+ L AKVR F +F+ F Sbjct: 240 RPSYSLGDDLRSGRLVQVLPGFDMGQVIMSMVYPSRRLLSAKVRSFAEFISARF 293 >gi|300312196|ref|YP_003776288.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 192 bits (488), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 162/295 (54%), Gaps = 2/295 (0%) Query: 1 VDRWMQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 +D+ + FV V E GS A + G S A SR ++ LE+ LG RL+ R+TRRL L+ Sbjct: 1 MDKLQAMQTFVAVVESGSFVAAVDVTGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 Query: 61 SGEAFYRQCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 G ++ +CK L +++ E V NS G LR+ + F ++ ++PL +F +P Sbjct: 61 EGRVYFARCKELLETIQDVESEVGLNSDQACGRLRIGAPQDFGVEQLAPLWGKFTEQHPL 120 Query: 121 ITLDVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPR 180 ITL++ ++R +DLL+ G D+AIR DS + R LA R I AAP +LA G P Sbjct: 121 ITLNITLSDRTIDLLEEGFDMAIRISALG-DSRMVARPLAPVRMIACAAPEFLARHGTPG 179 Query: 181 TLEQLSGHDLLVYSHSNTPNSLRFTHRDGSQCSLDIHALMQSNDGQIIRAAALEGLGILI 240 T +L + + YS+ + F H G C + + + + N+G RA A+ G GI I Sbjct: 180 TPAELRDYPFISYSYRAGGDDWSFRHVHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAI 239 Query: 241 QPNYIIYDDVVAGRLVPVLDEWDL-PRLVINIAYQGRKHLPAKVRVFIDFLVQHF 294 QP++I+ + AG+LV + + W +LV++ Y R HLP KV+ DFL++ F Sbjct: 240 QPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLIEQF 294 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 188 bits (477), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 171/303 (56%), Gaps = 4/303 (1%) Query: 1 VDRWMQFELFVQVAELGSLSRAAEALGMSNAAASRSLAALEERLGARLVERSTRRLGLSQ 60 +D++ Q F +VA GSLS AA A G++ A R L ALEERLG +L++R+TR++ L+ Sbjct: 1 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 Query: 61 SGEAFYRQCKAALTQMKEAEELVNANSVAPSGLLRVTSSLSFCMKHISPLLPRFHRLYPD 120 G AF C+ L +++AE V+ S SG L +++ F +H++PLLP F + D Sbjct: 61 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRD 120 Query: 121 ITLDVVAANRYVDLLDSGIDVAIRTREFEPDSNIAVRRLASTRRILAAAPGYLAARGVPR 180 +TL + +R D++ GIDVAIR DSN+ +LA R++ AAP YL G P+ Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLT-DSNLVSVKLAENHRVIVAAPAYLRRHGTPQ 179 Query: 181 TLEQLSGHDLLVYSHSNTPNSLRFTHRDGSQCSL-DIHALMQSNDGQIIRAAALEGLGIL 239 + ++L H+ L S + +T R + S+ + M NDG+++ AL G G+ Sbjct: 180 SPDELMRHNCLAMSSEGSQRG--WTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLA 237 Query: 240 IQPNYIIYDDVVAGRLVPVLDEWDLPRLVINIAYQGRKHLPAKVRVFIDFLVQHFAEMDY 299 + + + + AG LV VLD++ P I + R+HLP ++R F+DFL +A+ DY Sbjct: 238 WRSMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDY 297 Query: 300 ERK 302 +K Sbjct: 298 WKK 300 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 877,784 Number of extensions: 35288 Number of successful extensions: 250 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 56 Length of query: 305 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 220 Effective length of database: 1,217,395 Effective search space: 267826900 Effective search space used: 267826900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)