BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3630.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313015|ref|YP_003777107.1| maleylacetate reductase [Herbas...   590   e-170
gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...    97   3e-21

>gi|300313015|ref|YP_003777107.1| maleylacetate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  590 bits (1521), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 306/351 (87%), Positives = 325/351 (92%)

Query: 1   MQAFTYTSAAARVIFGVGSLQHLVREIELLGAQRALVLCTPGQRAEAERVAALIGPRCAG 60
           MQAFTYTSAAARVIFG GSLQHLVRE ELLGAQRALVLCTPGQRAEAERVAALIG RCAG
Sbjct: 1   MQAFTYTSAAARVIFGHGSLQHLVRETELLGAQRALVLCTPGQRAEAERVAALIGARCAG 60

Query: 61  IYDQAVMHVPIETARHARQVARELSADCAIAIGGGSTLGLGKAIALESDLPILAIPTTYA 120
           I+DQAVMHVPIETARHAR+VAR L ADCAIAIGGGST+GLGKAIALES+LPILAIPTTYA
Sbjct: 61  IFDQAVMHVPIETARHAREVARALGADCAIAIGGGSTMGLGKAIALESELPILAIPTTYA 120

Query: 121 GSEMTPIYGITEGGLKKTGRDARVLPRTVIYDPQLSSGLPLALSVTSGINALAHAAEGLY 180
           GSEMTPIYG+TE G KKTGRDARVLPRTVIYDP LS GLPL LSVTSGINA+AHAAEGLY
Sbjct: 121 GSEMTPIYGLTEAGRKKTGRDARVLPRTVIYDPALSLGLPLDLSVTSGINAMAHAAEGLY 180

Query: 181 AADANPIMSLLAEEGIRALAAGLPQLTLRSDDQEARSRCLYGAWLCGTVLGNVGMSLHHK 240
           A DANPIMSLLAEEG+RALA GLPQL  R+DD +ARSRCLYGAWLCGTVLGNVGMSLHHK
Sbjct: 181 APDANPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYGAWLCGTVLGNVGMSLHHK 240

Query: 241 LCHTLGGSYNLPHAETHTVILPHALAYNAPAAPHAMQRIARALGAQEAAMGVHALARSLQ 300
           LCHTLGGSYNLPHA+THTVILPHALAYNA AAP AMQRIARALG ++AA GV+ALAR+L 
Sbjct: 241 LCHTLGGSYNLPHAQTHTVILPHALAYNAAAAPQAMQRIARALGVEDAAQGVYALARALH 300

Query: 301 APLSLRELGMPYEGLERCTDIALQNAYANPRPLERAALRALLENAWHGHAP 351
           APLSL+ELGMPYE L +CT+IALQNAYANPRPL+R AL ALLE+AWHG  P
Sbjct: 301 APLSLKELGMPYEALAQCTEIALQNAYANPRPLQREALHALLEDAWHGRPP 351


>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 163/358 (45%), Gaps = 40/358 (11%)

Query: 12  RVIFGVGSLQHLVREIELLGAQRALVLCTPGQRAEAERVAALIGPRCAGI----YDQAVM 67
           +V F  G+L  L +E + LG ++ LV+   G R  A  +  ++G    G+    YDQ   
Sbjct: 9   QVQFDYGALALLQQECDRLGIKKPLVVTDMGIR-NAGLLDKVLGQLKEGVGAVVYDQTPP 67

Query: 68  HVPIETARHARQVARELSADCAIAIGGGSTLGLGKAIA--------------LESDL--- 110
           +      R A  + R+   D  +A+GGGS++ L K +A              +E  L   
Sbjct: 68  NPNEGAVRAAVALFRQHGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALIEGGLANI 127

Query: 111 -----PILAIPTTYA-GSEM-TPIYGITEGGLKKTGRDARVLPRTVIYDPQLSSGLPLAL 163
                P++AIPTT   GSE+      I + G K       ++P+  I DP+L+ GLP  +
Sbjct: 128 TAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPYLVPKLAICDPELTLGLPPLM 187

Query: 164 SVTSGINALAHAAEGLYAADANPIMSLLAEEGIRALAAGLPQLTLRSDDQEARSRCLYGA 223
           +  +G++A+AH  E   A   NP    +A +G+    A + + T    D+EAR   +  A
Sbjct: 188 TAATGMDAIAHCLETFMAPSFNPPADGIALDGLWRAWAHIERATREPGDREARLN-MMSA 246

Query: 224 WLCGTVLGNVGMSLHHKLCHTLGG-SYNLPHAETHTVILPHALAYNAPAA----PHAMQR 278
            + G +    G+   H L H+LGG +  L H   + + LP  +A+N  AA     + M R
Sbjct: 247 SMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIAFNESAASMVKDNKMAR 306

Query: 279 IARALG---AQEAAMGVHALARSLQAPLSLRELGMPYEGLERCTDIAL--QNAYANPR 331
           +A A+G     E    +  ++R L  P  L ELG+      +    AL   +   NPR
Sbjct: 307 MAHAMGLGSGAEIGPAIREMSRRLGLPAGLGELGVTESMFPQIIQGALADHSHKTNPR 364


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 988,116
Number of extensions: 39426
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)