BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3629.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313013|ref|YP_003777105.1| hypothetical protein Hsero_3719...   393   e-111

>gi|300313013|ref|YP_003777105.1| hypothetical protein Hsero_3719
           [Herbaspirillum seropedicae SmR1]
          Length = 252

 Score =  393 bits (1009), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/256 (80%), Positives = 221/256 (86%), Gaps = 4/256 (1%)

Query: 1   MTTSRTWLLAAGTLLLTTACSTPEERMAKLQLKQQRMELKAQQLAQRTDTRNEQRGKTQV 60
           M+ SRTWLLAA TLLLTTACSTPEERMAKLQ+KQQR+E+KAQQ AQR    NE   K Q 
Sbjct: 1   MSASRTWLLAAATLLLTTACSTPEERMAKLQIKQQRLEIKAQQAAQR----NEVISKAQG 56

Query: 61  TPVTDQRGPFENVVKALASCDASLAATLRQFSGAVQPAFVVTLKGPVAGIDVPDRHTPGR 120
             V DQR PFENV+KALA+CDAS AATL QF  A+ PAFVVT KG +A IDVPDR TPGR
Sbjct: 57  AAVIDQRAPFENVLKALANCDASFAATLGQFPEALSPAFVVTRKGKIASIDVPDRRTPGR 116

Query: 121 DRIAAAASAQAYGQTLSGYYDESVVINGQLQKMSWGFYSPATPEQLATALGAAIPNFKRT 180
           DR+AAA SA AYGQTLS YYDESV INGQ QK+SWGFYSP+TPEQLA  LGAAIPNFKRT
Sbjct: 117 DRVAAAGSALAYGQTLSAYYDESVEINGQPQKISWGFYSPSTPEQLARILGAAIPNFKRT 176

Query: 181 SRELDGKYTRMEIFERGGWHRTTRFDYYRGQPNVLGERSLVIEPSRDPAFPGSRIGCSVR 240
           SREL+G Y RMEIF+RGGWHRTTRFDYYRGQ NVLGER+LVIEPSRDPAFPGSRIGCSVR
Sbjct: 177 SRELNGNYVRMEIFDRGGWHRTTRFDYYRGQANVLGERTLVIEPSRDPAFPGSRIGCSVR 236

Query: 241 GSQVAQFQDELRPELD 256
           GSQVAQFQDELRPE+D
Sbjct: 237 GSQVAQFQDELRPEVD 252


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 742,996
Number of extensions: 30166
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)