BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3628.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313012|ref|YP_003777104.1| phosphopantetheinyl transferase...   221   3e-59

>gi|300313012|ref|YP_003777104.1| phosphopantetheinyl transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  221 bits (564), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 27  LARILSADERARLQAFLRPQRACEFLLGRLLLRHALMAVCGCTLDDIEVKERRGAAPLVM 86
           LA +LS  ER+RLQ F R  RACEFLLGRLL+R ALM      L++IEV+ER G AP+V 
Sbjct: 14  LAALLSPSERSRLQGFRRAPRACEFLLGRLLMRRALMQGSAGRLEEIEVEERPGYAPIVR 73

Query: 87  VAGQLADGIDHPAASLSHSRGWIACALGVVVQVGVDIEVPAQERDLQSLADLAFTSEELA 146
           +AG LADG+  PA SLSHSRGWIACA+G+   +GVDIE P   RDL +LA  AFT  EL+
Sbjct: 74  IAGVLADGVAQPAVSLSHSRGWIACAIGMGTPIGVDIEAPLAGRDLATLAGHAFTPAELS 133

Query: 147 WLTQQSPE---QQQAAFYRLWCANEADYKYRHNASLTRTPVAAQATPYLHHEHDPHYHLC 203
           WL  Q+ +    ++ AFYRLWCA EA+YKYRH+A      +AA   P LHHE  PHYHLC
Sbjct: 134 WLALQAKDDAGSREDAFYRLWCAKEAEYKYRHHAG-EHHALAASVPPTLHHERQPHYHLC 192

Query: 204 LCSPTRPERHQSARVGLESLLELTCS 229
           +CS     +H+S  + LE+LLE T  
Sbjct: 193 ICSRAEAGQHRSEEIALEALLEWTAG 218


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 658,076
Number of extensions: 22090
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)