BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3626.p (414 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 801 0.0 gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 197 2e-51 gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 123 2e-29 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/409 (94%), Positives = 398/409 (97%) Query: 6 TERRVVVTGMAGISPIGTDWSSALAHLKTYTNAVQRMSGWDEYVGLHTRLGAPAVEFSLS 65 TERRVVVTGMAGISPIGTDW+SALA LK+ +NAVQRM GWDEYVGLHTRLGAPA EFSLS Sbjct: 6 TERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAAEFSLS 65 Query: 66 ERYNRKTTRSMGRVALMATRASEWALADAGLLDHALLKSGQLGIAYGSSAGTPNAIADFA 125 ERYNRKTTRSMGRVALMATRASEWALADAGLLD LLKSGQLGIAYGSSAGTPNAIADFA Sbjct: 66 ERYNRKTTRSMGRVALMATRASEWALADAGLLDDPLLKSGQLGIAYGSSAGTPNAIADFA 125 Query: 126 MMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYAYETIR 185 MMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYAYETIR Sbjct: 126 MMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYAYETIR 185 Query: 186 SGRQVAMVAGGSEELCATEAAVFDTLYATSVRNDTPQLTPSPFDRDRDGLVLGEGAGSLI 245 SGRQ+AMVAGG+EELCATEAAVFDTLYATSVRNDTPQ+TPSPFDRDRDGLVLGEGAGSLI Sbjct: 186 SGRQLAMVAGGAEELCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVLGEGAGSLI 245 Query: 246 LEDLDHAQARGARIYAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAALPASSIGYIN 305 LEDL+HAQARGA I+AEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDA LPAS+IGYIN Sbjct: 246 LEDLEHAQARGAHIHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLPASAIGYIN 305 Query: 306 AHGTGTRQGDVAETQATARIFGTATPISSLKSYMGHTLGACGALEAWLSIEMMRHGWFAP 365 AHGTGTRQGDVAETQATAR+FG ATPISSLKSYMGHTLGACGALEAWLSIEMMRHGWFAP Sbjct: 306 AHGTGTRQGDVAETQATARVFGKATPISSLKSYMGHTLGACGALEAWLSIEMMRHGWFAP 365 Query: 366 TINLQQPDPECGELDYLTGSGRTLECEYVMSNNFAFGGINTSLIFKRWP 414 TINLQ PDP+CGELDYLTG+GR LECEYVMSNNFAFGGINTSLIFKRWP Sbjct: 366 TINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKRWP 414 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 197 bits (500), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 136/412 (33%), Positives = 206/412 (50%), Gaps = 11/412 (2%) Query: 7 ERRVVVTGMAGISPIGTDWSSALAHLKTYTNAVQRMSGWDEYVGLHTRLGAPAVEFSLSE 66 ERRVV+TG+ ISP+G + + + +K + + ++ +D T F++ + Sbjct: 6 ERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDA-TPFTTHFAGEVKGFNIED 64 Query: 67 RYNRKTTRSMGRVALMATRASEWALADAGLL--DHALLKSGQLGIAYGSSAGTPNAIADF 124 K R M A A+ D+GL D + ++G+ GS G I + Sbjct: 65 YIPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDE---NAERIGVMIGSGIGGLPLIEET 121 Query: 125 AMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIGYAYETI 184 + R I+ + + N+ + FG+ G + +ACT+G IG A I Sbjct: 122 HAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARMI 181 Query: 185 RSGRQVAMVAGGSEE-LCATEAAVFDTLYATSVRNDTPQLTPSPFDRDRDGLVLGEGAGS 243 G MVAGG+E + F + A S RND P P+D+DRDG VLGEGAG Sbjct: 182 MYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAGV 241 Query: 244 LILEDLDHAQARGARIYAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAALPASSIGY 303 ++LE+ +HA+ARGA+IYAE++GFG + D H+T PN + + AL DA + + Y Sbjct: 242 MVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVNPDEVQY 301 Query: 304 INAHGTGTRQGDVAETQATARIFGT---ATPISSLKSYMGHTLGACGALEAWLSIEMMRH 360 +NAHGT T GD E+ A FG ++S KS GH LG G LE L++ + + Sbjct: 302 LNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVHN 361 Query: 361 GWFAPTINLQQPDPECGELDYLTGSGRTLECEYVMSNNFAFGGINTSLIFKR 412 PT+N+ DPEC +LDY R ++ + + N+F FGG N +L+ + Sbjct: 362 QVSPPTMNIFNQDPEC-DLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGK 412 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/265 (34%), Positives = 125/265 (47%), Gaps = 25/265 (9%) Query: 157 FGITGRIITTSSACTSGSQGIGYAYETIRSGRQVAMVAGGSEELCATEAAVFDTLYATSV 216 G TG SSAC S + I A + G A++ GG + LC A F L + S Sbjct: 147 LGTTGPAYVQSSACASSGKAIASAARLLNMGLCDAVLCGGVDTLCQFTIAGFTALESVSA 206 Query: 217 RNDTPQLTPSPFDRDRDGLVLGEGAGSLILEDLDHAQARGARIYAEIVGFGTNSDGAHVT 276 + +P R G+ +GEGA +L A ++ G+G +SD H++ Sbjct: 207 QRC------NPLSLHRQGINIGEGAALFLLTREPAA--------VQLSGWGESSDAYHIS 252 Query: 277 --NPNAATMQAAIQMALDDAALPASSIGYINAHGTGTRQGDVAETQATARIFGTATPISS 334 +P Q AI AL A L AS I YIN HGT T Q D E++ +FG P+SS Sbjct: 253 APDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQNDAMESKVVQALFGLEVPVSS 312 Query: 335 LKSYMGHTLGACGALEAWLSIEMMR----HGWFAPTINLQQPDPECGELDYLTGS---GR 387 K + GHTLGA A+EA L +M+ G P + DP L + GR Sbjct: 313 TKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDGVADPALPALAPVQVGQRLGR 372 Query: 388 TLECEYVMSNNFAFGGINTSLIFKR 412 L +V+SN+FAFGG N +L+F R Sbjct: 373 PL--RHVLSNSFAFGGSNVALVFSR 395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.131 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,301,290 Number of extensions: 55073 Number of successful extensions: 190 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 3 Length of query: 414 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 326 Effective length of database: 1,203,190 Effective search space: 392239940 Effective search space used: 392239940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)