BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3623.p (399 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 688 0.0 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 124 9e-30 gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 101 1e-22 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/399 (89%), Positives = 373/399 (93%) Query: 1 MSLYLNALGMVCPLGSAHGTIRTRLLAGTSGVRANARYVDASGQSLALGAVADDTVLPDD 60 MSLYLNALGMVCPLGSAH IRTRLLAG SG+RA+ARY+DA G+ LALGAV DDT LP+D Sbjct: 1 MSLYLNALGMVCPLGSAHDAIRTRLLAGVSGLRADARYLDAHGEPLALGAVPDDTRLPED 60 Query: 61 SHLPLRERSRNNRLALAALQGIRPQVDAAIARYGAQRLAIVLGTSTSGIAEGETAFSQRA 120 HLPLRERSRNNRLALAALQ IR QVDAAIARYGA+R+ IVLGTSTSGIAEGE AF+ RA Sbjct: 61 DHLPLRERSRNNRLALAALQRIRVQVDAAIARYGAERIGIVLGTSTSGIAEGEAAFAARA 120 Query: 121 ASGNFPAGYHYGQQELGSPAIALQLTLGTSGPAYVQSSACASSGKAIASAARLLNMGLCD 180 ASG+FP GYHYGQQELGSPA ALQLTLGT+GPAYVQSSACASSGKAIASAARLLNMGLCD Sbjct: 121 ASGSFPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSGKAIASAARLLNMGLCD 180 Query: 181 AVLCGGVDTLCEFTIAGFTALESVSAQRCNPLSLHRQGINIGEGAALFLLTREPASVELS 240 AVLCGGVDTLC+FTIAGFTALESVSAQRCNPLSLHRQGINIGEGAALFLLTREPA+V+LS Sbjct: 181 AVLCGGVDTLCQFTIAGFTALESVSAQRCNPLSLHRQGINIGEGAALFLLTREPAAVQLS 240 Query: 241 GWGESSDAYHISAPDPEGKGAQLAIHEALRRAGLEAAQIDYINLHGTATAQNDAMESHVV 300 GWGESSDAYHISAPDPEG+GAQLAI +ALRRAGL A+QIDYINLHGTAT QNDAMES VV Sbjct: 241 GWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDYINLHGTATPQNDAMESKVV 300 Query: 301 QTLFGLNVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDGQLPPHLWDGVADPALPA 360 Q LFGL VPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDG LPPHLWDGVADPALPA Sbjct: 301 QALFGLEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDGLLPPHLWDGVADPALPA 360 Query: 361 LQPVVLGQRLGRPLRHVLSNSFAFGGSNVALVFSRREVA 399 L PV +GQRLGRPLRHVLSNSFAFGGSNVALVFSR E A Sbjct: 361 LAPVQVGQRLGRPLRHVLSNSFAFGGSNVALVFSRGENA 399 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 124 bits (312), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 92/269 (34%), Positives = 128/269 (47%), Gaps = 21/269 (7%) Query: 141 IALQLTLGTSGPAYVQSSACASSGKAIASAARLLNMGLCDAVLCGGVDTLCEFTIAGFTA 200 + + + G +G SSAC S + I A + G A++ GG + LC A F Sbjct: 151 VNMGVFFGITGRIITTSSACTSGSQGIGYAYETIRSGRQLAMVAGGAEELCATEAAVFDT 210 Query: 201 LESVSAQRC------NPLSLHRQGINIGEGA-ALFLLTREPASV-------ELSGWGESS 246 L + S + +P R G+ +GEGA +L L E A E+ G+G +S Sbjct: 211 LYATSVRNDTPQVTPSPFDRDRDGLVLGEGAGSLILEDLEHAQARGAHIHAEIVGFGTNS 270 Query: 247 DAYHISAPDPEGKGAQLAIHEALRRAGLEAAQIDYINLHGTATAQNDAMESHVVQTLFGL 306 D H++ +P Q AI AL AGL A+ I YIN HGT T Q D E+ +FG Sbjct: 271 DGAHVT--NPNAATMQAAIQMALDDAGLPASAIGYINAHGTGTRQGDVAETQATARVFGK 328 Query: 307 NVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDDNPDGQLPPHLWDGVADPALPALQPVVL 366 P+SS K + GHTLGA A+EA L +M+ G P + DP L + Sbjct: 329 ATPISSLKSYMGHTLGACGALEAWLSIEMMR----HGWFAPTINLQHPDPDCGELD-YLT 383 Query: 367 GQRLGRPLRHVLSNSFAFGGSNVALVFSR 395 G +V+SN+FAFGG N +L+F R Sbjct: 384 GNGRALECEYVMSNNFAFGGINTSLIFKR 412 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 107/417 (25%), Positives = 181/417 (43%), Gaps = 37/417 (8%) Query: 3 LYLNALGMVCPLGSAHGTIRTRLLAGTSGVRANARYVDASGQSLALGAVADDTVLPDDSH 62 + + LG + P+G+ + + G SG+ ++ + G V + + + Sbjct: 9 VVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDATPFTTHFAGEVKGFNI---EDY 65 Query: 63 LPLRE-RSRNNRLALAALQGIRPQVDA--AIARYGAQRLAIVLGTSTSG---IAEGETAF 116 +P +E R + + GI+ D+ + A+R+ +++G+ G I E Sbjct: 66 IPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDENAERIGVMIGSGIGGLPLIEETHAEL 125 Query: 117 SQRAASGNFPAGYHYGQQELGSPAIALQLTLGTSGPAYVQSSACASSGKAIASAARLLNM 176 + R P + + + L + G GP +AC + I SAAR++ Sbjct: 126 TNRGPRRISP--FFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARMIMY 183 Query: 177 GLCDAVLCGGVDT-LCEFTIAGFTALESVSAQRCNPLS------LHRQGINIGEGAALFL 229 G D ++ GG ++ + I GF + ++S + +P + R G +GEGA + + Sbjct: 184 GDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAGVMV 243 Query: 230 LTR-EPASV-------ELSGWGESSDAYHISAPDPEGKGAQLAIHEALRRAGLEAAQIDY 281 L E A EL G+G S DAYH++AP+ +G + + ALR AG+ ++ Y Sbjct: 244 LEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGP--RRCVLNALRDAGVNPDEVQY 301 Query: 282 INLHGTATAQNDAMESHVVQTLFG---LNVPVSSTKPFTGHTLGAASAIEAGLCWLLMQD 338 +N HGT+T D ES ++ FG + V+STK TGH LG A +E L L + + Sbjct: 302 LNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVHN 361 Query: 339 DNPDGQLPPHLWDGVADPALPALQPVVLGQRLGRPLRHVLSNSFAFGGSNVALVFSR 395 PP + DP Q + + NSF FGG+N LV + Sbjct: 362 QVS----PPTMNIFNQDPECDL--DYCANQARDMKIDIAVKNSFGFGGTNGTLVIGK 412 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,339,355 Number of extensions: 60742 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 235 Number of HSP's successfully gapped: 3 Length of query: 399 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 312 Effective length of database: 1,207,925 Effective search space: 376872600 Effective search space used: 376872600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)