BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3621.p
         (803 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313006|ref|YP_003777098.1| exporter protein [Herbaspirillu...  1124   0.0  

>gi|300313006|ref|YP_003777098.1| exporter protein [Herbaspirillum
           seropedicae SmR1]
          Length = 810

 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/809 (83%), Positives = 725/809 (89%), Gaps = 7/809 (0%)

Query: 1   LTKPGRSL---PGLLALGWLLAVLLLAGHNAWLWLGQRASPDTDILALLP-SSGNDAVRQ 56
           +TKP R L   P LLAL WLLAVLL+AGHNAWLWLGQRASPDTDILALLP +S  DAVRQ
Sbjct: 1   MTKPARHLQRLPRLLALAWLLAVLLVAGHNAWLWLGQRASPDTDILALLPGASSKDAVRQ 60

Query: 57  QAFTHMVDAAQQKVVVLVGDRDWARAQQGADAYLALLRPYAKLLAPINDDTAQLQSQWLD 116
           QAF+HMVD+AQQK+VVLVGDRDW RAQ GA AYL +L  +A L+APINDD+AQ QSQWL 
Sbjct: 61  QAFSHMVDSAQQKLVVLVGDRDWKRAQAGAQAYLTVLHAHADLVAPINDDSAQWQSQWLG 120

Query: 117 SLERSRAVLLSDAQRAQLASWSPQQWSQRALASLYGAFGGPRLGAWQDDPFSLFGDWVQE 176
           SL+RSR++LL DAQRAQLA+ + QQW+QRAL  LYGAFGGPRLGAWQDDPF LFGDWVQE
Sbjct: 121 SLDRSRSLLLGDAQRAQLATTTAQQWNQRALGGLYGAFGGPRLGAWQDDPFGLFGDWVQE 180

Query: 177 RARETPVRPRDGKLFVERDGVSYVLLLLELKAPAFSMQAQEQVVPLLARARQAALAHADQ 236
           RARETPVRPRDG LFVERDGVSY LLLLELKAPAFSMQAQEQVVPLLA+AR+AA   A +
Sbjct: 181 RARETPVRPRDGMLFVERDGVSYALLLLELKAPAFSMQAQEQVVPLLAQARRAARTQAGE 240

Query: 237 VRTGGVVLHAAAASAQAGSESATIGAGSLVGILLLMWLSFRSLKPILYIATSIAVGCLGA 296
           V +GGVVLHAAAASAQA SESATIGAGSL+GILLLMWL+FRSLKPILYIA SIAVGCLGA
Sbjct: 241 VVSGGVVLHAAAASAQASSESATIGAGSLLGILLLMWLTFRSLKPILYIALSIAVGCLGA 300

Query: 297 LSVSMWLFGQIHLLTLVFGASLIGIAQDYGIYFLCARLAAPAELDSPTLLRRLLPGLALM 356
           LSVSM +FG+IHLLTLVFGASLIGIAQDYGIYFLCARLAAPA  DS TLLRRLLPGLALM
Sbjct: 301 LSVSMLVFGKIHLLTLVFGASLIGIAQDYGIYFLCARLAAPATQDSATLLRRLLPGLALM 360

Query: 357 LLAAVIGYLGMAATPFPGLQQMAVFSALGLLFAWLTVACWFPQLIGPHSLRATPLAQRFG 416
           LLAA+IGYLGMA TPFPGLQQMAVFSALGL+FAWLTVACWFPQLIGP +L ATP AQ FG
Sbjct: 361 LLAALIGYLGMALTPFPGLQQMAVFSALGLVFAWLTVACWFPQLIGPQTLCATPRAQGFG 420

Query: 417 QSILRWPNLLGGLAWHLVLPTAAALVGLAATGITRLHSSDDLRALQKSPPQLLQDQIRIS 476
           QSI RWP+LLGG AWHLVLP A AL+GLA  G+ RLHSSDD+RALQKSPP+LLQDQ+RIS
Sbjct: 421 QSIARWPDLLGGFAWHLVLPAAVALIGLAIAGVARLHSSDDIRALQKSPPELLQDQMRIS 480

Query: 477 QLLDMAAPVQFYLVRGESAEAVLQQEEALRSKLQPLLDRQIINGVQALSNWVPSQRRQQD 536
           QLL++AAPVQFYLVRG SAEAVLQQEEALR KLQ L+ R++I GVQA+SNW PSQ+RQQD
Sbjct: 481 QLLELAAPVQFYLVRGASAEAVLQQEEALREKLQALVQRKLITGVQAVSNWAPSQQRQQD 540

Query: 537 NLALLRQALLEPRGETPDPVTLTARAIEESPAWAQALRQRLLDKAHPITPEEFLATPAGA 596
           NLALLR+ALLEP+GE+PD VTLTA+AI ESP WAQALRQR+LDK  PITPEEFLATPAGA
Sbjct: 541 NLALLRRALLEPQGESPDAVTLTAQAIGESPQWAQALRQRMLDKTQPITPEEFLATPAGA 600

Query: 597 ASRHLWLGRVGGSYASIVALRGLTDYRQLDQLAAAAAGLKGVQWVDKVGEISSVLRYYRI 656
           ASRHLWLG+V G +ASIVALRGLTDYRQL QLAA A G+ GVQWVDKVGEISSVLR YRI
Sbjct: 601 ASRHLWLGQVDGQFASIVALRGLTDYRQLGQLAAVAEGMPGVQWVDKVGEISSVLRQYRI 660

Query: 657 YMGWALLAAYAGIFALLSWRYRGRAWRALAPPLLASFLTLGLFGWLGQPLQLFHVLAGLL 716
           YMGWALL AYA IFALL+ RYR RAWRALAPPLLAS LTLGLFGWLGQPLQLFHVLAGLL
Sbjct: 661 YMGWALLCAYAAIFALLALRYRRRAWRALAPPLLASLLTLGLFGWLGQPLQLFHVLAGLL 720

Query: 717 VLGLGVDYGIFLLESSPRQRPHAWLTVGLSAASALLSFGLLALSHSPPLHAFGLTMLCAM 776
           VLGLGVDYGIFLLESS  QRPHAWLTV LSAASALLSFGLLALSHSPPLHAFGLTMLC M
Sbjct: 721 VLGLGVDYGIFLLESSRDQRPHAWLTVALSAASALLSFGLLALSHSPPLHAFGLTMLCGM 780

Query: 777 LLVWLLAPLFTHPGQGAHAVP---PGKES 802
           LLVWLLAPLFTHPG  AHA P   P KES
Sbjct: 781 LLVWLLAPLFTHPGPAAHATPDAQPDKES 809


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,388,301
Number of extensions: 95180
Number of successful extensions: 432
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 1
Length of query: 803
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 710
Effective length of database: 1,179,515
Effective search space: 837455650
Effective search space used: 837455650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 134 (56.2 bits)