BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3616.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313001|ref|YP_003777093.1| glycosyl transferase, group 2 f...   430   e-122

>gi|300313001|ref|YP_003777093.1| glycosyl transferase, group 2
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  430 bits (1106), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/247 (84%), Positives = 223/247 (90%)

Query: 7   HKTVVVIPVYNHEHAIGAVVEAVRRHGLPCVLVDDGCSPGCAAVLQQLAAADAQHVSLLV 66
           H+TVVVIPV++HEHAIGAVV AVR HGLPC+LVDDGCSPGCAAVL+QLAAAD Q  +LLV
Sbjct: 7   HRTVVVIPVFDHEHAIGAVVAAVRSHGLPCILVDDGCSPGCAAVLRQLAAADPQATTLLV 66

Query: 67  HAHNQGKGGAVMTGLRHAAANGYTHALQIDADGQHDSADIPRFLAASRAAPTAVINGRPI 126
           H HNQGKGGAVMTGLRHAAA GYTHALQIDADGQHDSADIPRFLAAS+AAP AVINGRP+
Sbjct: 67  HPHNQGKGGAVMTGLRHAAAAGYTHALQIDADGQHDSADIPRFLAASQAAPQAVINGRPV 126

Query: 127 YDQSVPKGRLYGRYLTHVWVWINTLSLEIADSMCGFRVYPLLPTLRLIDSAHIGRRMDFD 186
           YD+SVPKGRLY RYLTHVWVWINTLSLEI DSMCGFR+YPL PTL+LID   IGRRMDFD
Sbjct: 127 YDESVPKGRLYARYLTHVWVWINTLSLEIVDSMCGFRLYPLAPTLQLIDRTTIGRRMDFD 186

Query: 187 TEILVRLFWRGVRVHNLATRVSYPADGVSHFQMWQDNVRISGMHTRLFLGMLPRAPFLLV 246
           TEILVRL+WRG+RVHNLATRV YPADGVSHFQ+W DNV IS MH RLFLGML RAP LL 
Sbjct: 187 TEILVRLYWRGLRVHNLATRVRYPADGVSHFQVWLDNVLISRMHARLFLGMLLRAPLLLG 246

Query: 247 RGTWRRL 253
           R  WRRL
Sbjct: 247 RSCWRRL 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 845,920
Number of extensions: 33865
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)