BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3609.p (523 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311974|ref|YP_003776066.1| methyl-accepting chemotaxis I p... 809 0.0 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 358 e-100 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 323 3e-89 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 319 3e-88 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 318 6e-88 >gi|300311974|ref|YP_003776066.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/516 (83%), Positives = 479/516 (92%) Query: 1 MSLLHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKEWR 60 MSLL++L+VGRRLALG+ VI+GLM+AMLL ML QL+ V QAN ILQ+EQAERLSLAKEWR Sbjct: 1 MSLLNRLTVGRRLALGFVVIIGLMLAMLLAMLAQLKQVEQANQILQKEQAERLSLAKEWR 60 Query: 61 ENIVVNVARALALGVTANDTLLKFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAILQRMG 120 ENIVVNVARALALGVTAN+TLLKFF+DDMA LV RTT IQKRY ELD TEEGK IL+RM Sbjct: 61 ENIVVNVARALALGVTANETLLKFFADDMAGLVTRTTVIQKRYAELDDTEEGKTILERMA 120 Query: 121 EERKRYLVVRQKLEEVGADAATRAQLVQDMQSIATAYIKQGTNLVHYQEKRTHELGGEID 180 +ERKRYLVVRQ++EEVGADAATR QLVQDM+SI+ AYIK+GT+LV YQE+RT ELGG+ID Sbjct: 121 KERKRYLVVRQQMEEVGADAATRQQLVQDMKSISAAYIKEGTSLVQYQERRTAELGGQID 180 Query: 181 AALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDLTASVPAAQG 240 AA+DRSR VL+GATAASI+ A+LLGWLLT+SIAAPLHEMQ LTL+IAAGDLT++VPAA G Sbjct: 181 AAIDRSRFVLMGATAASILLAVLLGWLLTQSIAAPLHEMQALTLQIAAGDLTSTVPAATG 240 Query: 241 RSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQAASSLEQT 300 RSELA+LL NVG+MQESLRSLVSKSRQAA+SVNQASSEAAAGN+DLSARTEQAASSLEQT Sbjct: 241 RSELASLLKNVGSMQESLRSLVSKSRQAALSVNQASSEAAAGNADLSARTEQAASSLEQT 300 Query: 301 ASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEASRRIADII 360 ASAME+IA+TAQQSAEFARSAN QV++AS VAQ GGQVMGDVVQTM RIDE+SRRIADII Sbjct: 301 ASAMEEIAATAQQSAEFARSANAQVAQASGVAQHGGQVMGDVVQTMGRIDESSRRIADII 360 Query: 361 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKDLINASM 420 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIK+LINAS+ Sbjct: 361 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKELINASL 420 Query: 421 SAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAISQLEQATQ 480 +AV GGMSLV DAGKII+DVVQNV+LVR TI+EISVAAEEQSRGI EVN AIS +EQ TQ Sbjct: 421 AAVDGGMSLVGDAGKIIQDVVQNVELVRGTISEISVAAEEQSRGIAEVNIAISNMEQTTQ 480 Query: 481 QNAALVEQTTSATLQLNQQAVVLAEVISDFKLPLEH 516 QNA+LVEQTT+AT+QLNQQAV+LAEVIS FKLP ++ Sbjct: 481 QNASLVEQTTAATMQLNQQAVLLAEVISGFKLPAQY 516 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 358 bits (919), Expect = e-100, Method: Compositional matrix adjust. Identities = 232/523 (44%), Positives = 326/523 (62%), Gaps = 5/523 (0%) Query: 1 MSLLHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKEWR 60 M+++ +++GRRL LG+A+I+ + + + L +L V QA + E + L +W Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 ENIVVNVARALALGVTANDTLLKFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAILQRMG 120 N+V + R +A+ +++ L +F+ ++A K + E QK+ L T E KA+ Q++G Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 EERKRYLVVRQKLEEVGADAATRAQ---LVQDMQSIATAYIKQGTNLVHYQEKRTHELGG 177 E RK YL R ++ + A T L Q ATAY LV +Q K + Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 178 EIDAALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDLTASVPA 237 EIDA +SR ++L ++ I+ LT I PLH ++ +A GDL++ + A Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEI-A 239 Query: 238 AQGRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQAASSL 297 R E LL ++ +M +SLR +VS R +++ ASSE AAGN DLS+RTEQ ASSL Sbjct: 240 VTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSL 299 Query: 298 EQTASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEASRRIA 357 +TASAME++ ST +Q+A+ AR A+ + AS VA+QGG V+ VV TM I+ +SR+I Sbjct: 300 AETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIV 359 Query: 358 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIKDLIN 417 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AA+EIK+LIN Sbjct: 360 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIN 419 Query: 418 ASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAISQLEQ 477 S+ V G LV AG +++VV +V V +AEIS A+ EQ+ GI ++N AI+Q++Q Sbjct: 420 DSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQ 479 Query: 478 ATQQNAALVEQTTSATLQLNQQAVVLAEVISDFKLPLEHSALV 520 TQQNAALVE+ +A + QA L +++S F+L E LV Sbjct: 480 VTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLS-EREPLV 521 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 323 bits (827), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 221/530 (41%), Positives = 308/530 (58%), Gaps = 22/530 (4%) Query: 4 LHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKE----- 58 + L +G RLA+G+ ++ LM M+ + + +L ++G A D + R++L KE Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMT-----RIALKKERDAVQ 55 Query: 59 WRENIVVNVARALALGVTANDTLLKFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAILQR 118 W I N R A+ + +D +F + R +++QK E K + Sbjct: 56 WHAAIKENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDE 115 Query: 119 MGEERKRYLVVRQKLEEV---GADAATR----AQLVQDMQSIATAYIKQGTNLVHYQEKR 171 +G+ R Y RQ + +V G DA R LV+ M A ++ +Q++ Sbjct: 116 VGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLR----YADFQKQV 171 Query: 172 THELGGEIDAALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDL 231 + I+ R +LL A IV L WLLTRSI PL++ T+ +AAGDL Sbjct: 172 IDQTAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDL 231 Query: 232 TASVPAAQGRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTE 291 T+ + ++ R E LL + M +L +V + R ++N AS E A GN DLSARTE Sbjct: 232 TSRIDSS-SRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTE 290 Query: 292 QAASSLEQTASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDE 351 A SLE+TASAMEQ+ ST +Q+A+ AR AN + AS VA QGG V+ VV TM I Sbjct: 291 AQAGSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHA 350 Query: 352 ASRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAARE 411 +S++IADII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA+E Sbjct: 351 SSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE 410 Query: 412 IKDLINASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAA 471 IK LI+ S+ V G LV AG +++VVQ+V V + EI++A++EQS GI +VN A Sbjct: 411 IKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLA 470 Query: 472 ISQLEQATQQNAALVEQTTSATLQLNQQAVVLAEVISDFKLPLEHSALVI 521 I+ +++ TQQNAALVEQ +A + QA L + +S F+L + L + Sbjct: 471 ITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLEDDAQVLAV 520 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 319 bits (818), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 221/519 (42%), Positives = 312/519 (60%), Gaps = 12/519 (2%) Query: 1 MSLLHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKEWR 60 M + L++ ++LAL +AV++ L + L + +L+ V +A+ + + + A+E + Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 ENIVVNVARALAL--GVTANDTLL--KFFSDDMAYLVKRTTEIQKRYTELDQTEEGKAIL 116 ++ L L VT + K D + L ++ ++R +E + E+ L Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 117 QRMGEERKRYLVVRQKLEEVGADA---ATRAQLVQDMQSIATAYIKQGTNLVHYQEKRTH 173 + + Y+ V ++L E+ A+ TRA D + + + +V + Sbjct: 121 KNL----TAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSA 176 Query: 174 ELGGEIDAALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDLTA 233 + E ++ ++G AA+++ A LL +L+ +++ PL E + R+A GDLT Sbjct: 177 QADEEASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTL 236 Query: 234 SVPAAQGRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQA 293 + A GR E AL+ + M ESLR +VS+ RQ ++ AS E A GN DLS RTEQ Sbjct: 237 RIRPA-GRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQ 295 Query: 294 ASSLEQTASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEAS 353 A SLE+TASAME++ ST Q+A+ AR AN + ASD+A QGG+V+G VVQTM I E+S Sbjct: 296 AGSLEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESS 355 Query: 354 RRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIK 413 RRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA+EIK Sbjct: 356 RRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIK 415 Query: 414 DLINASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAIS 473 +LI+ S+ V G +LV AG + +VV +V V +AEIS A +EQS GI EVN AI+ Sbjct: 416 ELIDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAIT 475 Query: 474 QLEQATQQNAALVEQTTSATLQLNQQAVVLAEVISDFKL 512 Q+++ TQQNAALVEQ +A L QA LA V+ FKL Sbjct: 476 QMDETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 318 bits (816), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 224/519 (43%), Positives = 322/519 (62%), Gaps = 18/519 (3%) Query: 4 LHKLSVGRRLALGYAVIVGLMVAMLLVMLGQLRAVGQANDILQEEQAERLSLAKEWRENI 63 L + + RLA+ +AV++G+M + V + L ++ +++ ++ E++ E+++LA E R+N Sbjct: 3 LKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDN- 61 Query: 64 VVNVARALALGVTANDTLLKFFSDDMAYLVK------RTTEIQKRYTELDQTEEGKAILQ 117 V AR L N L + + YL + +TTE + ++ T G+ + Q Sbjct: 62 VNGAARNLR-----NALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQ 116 Query: 118 RMGEERKRYLVVRQKLEEV----GADAATRAQLVQDMQSIATAYIKQGTNLVHYQEKRTH 173 + E R Y R KL E+ + A Q + + Y + V +Q+ Sbjct: 117 SIQEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPA-QDKYFQVLDQFVAFQKSLME 175 Query: 174 ELGGEIDAALDRSRLVLLGATAASIVCAILLGWLLTRSIAAPLHEMQTLTLRIAAGDLTA 233 + E + ++LG +A +I ++ WL+TRSI PL+E ++ +AAGDLT Sbjct: 176 QSVTEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTV 235 Query: 234 SVPAAQGRSELAALLNNVGNMQESLRSLVSKSRQAAMSVNQASSEAAAGNSDLSARTEQA 293 + A + E ALL + +M +SL +VS+ RQ + ++N AS+E A GN DLS+RTE+ Sbjct: 236 QI-GATSKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQ 294 Query: 294 ASSLEQTASAMEQIASTAQQSAEFARSANHQVSKASDVAQQGGQVMGDVVQTMNRIDEAS 353 A +LE+TASAME++ ST +Q+A+ AR AN + AS+VA QGG V+G VVQTM I++AS Sbjct: 295 AGALEETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDAS 354 Query: 354 RRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSATAAREIK 413 R+I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AA+EIK Sbjct: 355 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIK 414 Query: 414 DLINASMSAVGGGMSLVNDAGKIIRDVVQNVDLVRKTIAEISVAAEEQSRGIGEVNAAIS 473 LI+ S+S V G LV AG + +VV +V V +AEIS A+ EQS GI ++N AI+ Sbjct: 415 ALIDDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAIT 474 Query: 474 QLEQATQQNAALVEQTTSATLQLNQQAVVLAEVISDFKL 512 Q++Q TQQNAALVE+ +A L +Q+ L+ +S FKL Sbjct: 475 QMDQVTQQNAALVEEAAAAAQSLQEQSTRLSATVSVFKL 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.126 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,136,993 Number of extensions: 38520 Number of successful extensions: 723 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 384 Number of HSP's successfully gapped: 72 Length of query: 523 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 433 Effective length of database: 1,193,720 Effective search space: 516880760 Effective search space used: 516880760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)