BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3608.p (1133 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312993|ref|YP_003777085.1| hypothetical protein Hsero_3699... 1728 0.0 >gi|300312993|ref|YP_003777085.1| hypothetical protein Hsero_3699 [Herbaspirillum seropedicae SmR1] Length = 1124 Score = 1728 bits (4476), Expect = 0.0, Method: Compositional matrix adjust. Identities = 858/1133 (75%), Positives = 1000/1133 (88%), Gaps = 9/1133 (0%) Query: 1 MSKPGIAALTQHPTWQRLRRPLRWLTWTVAVLLTLAALSWAALPALVRKIAIDQTQAQIG 60 MSKPG+A+LT+ P WQRLRRPL+WL W +AVLL LAALSWAALPALVRK+A++QTQAQ+G Sbjct: 1 MSKPGLASLTKQPAWQRLRRPLKWLAWMLAVLLALAALSWAALPALVRKLAVEQTQAQLG 60 Query: 61 RKLEIGQISFNPFKLALRASDITLYEADGKRPFFSTQGLLADLSSASLLRLAPVLDEIKL 120 RKL++G +SFNPF+LAL+ SDITLYEADGK PF + Q LL D SSASLL LAPVLDE++L Sbjct: 61 RKLDVGAVSFNPFRLALQVSDITLYEADGKTPFLAVQSLLVDASSASLLCLAPVLDEVRL 120 Query: 121 TTPQLHLVRLDADGIGHYNFSDILDRLAAQPKSEGQARFSLANVQLQDGAIHFEDKVSGK 180 + PQL + R+DAD GHYNFSDIL+RLAAQPKSEGQARFSLANVQLQDGAIHFEDK++GK Sbjct: 121 SKPQLRVQRIDADQGGHYNFSDILERLAAQPKSEGQARFSLANVQLQDGAIHFEDKLTGK 180 Query: 181 NIDIAALQVGLPFISNLPGNIDSYVQPQLSAIINGTPLHLKGRSKPFTASQESAFAIDID 240 IDIAALQVGLPFISNLPGNIDS+VQPQLSA INGTPLHLKGRSKPF+++ ESAFAIDI+ Sbjct: 181 TIDIAALQVGLPFISNLPGNIDSFVQPQLSATINGTPLHLKGRSKPFSSTLESAFAIDIE 240 Query: 241 QLDLVSYLPFVPAELPVAIQSAKLSTRLDLGFTRQDDKPTVTLAGDIRIDDIALQDKTRA 300 +LDLVSYLPFVP ELPV +QS LSTRLDLGF RQ DKPT+TLAGD+ +DDIA+ D+ +A Sbjct: 241 RLDLVSYLPFVPMELPVLLQSGHLSTRLDLGFNRQQDKPTITLAGDVVLDDIAVADRAKA 300 Query: 301 PLLKAKSLALQLKQFDLLAASGEVSQLTLEQPQVWASMNARGELNWVRAFASPTKPASKG 360 PLLKA+ LA++L QFD+LAASG++SQ+TLEQPQ+WASMN RGE+NWVRA A+P Sbjct: 301 PLLKARQLAVKLGQFDVLAASGQISQVTLEQPQIWASMNGRGEINWVRALAAP------- 353 Query: 361 ASSAPSKATTPAATTPAAAIVLQQLNLHGGEINWRDEANAAPAQTIKLSKVELNAAQLST 420 A+ + A+ A + A+AIVLQQLN+ G +NWRDEANA+PAQ ++LS +E++AAQLST Sbjct: 354 ATGKRTAASQAATSAQASAIVLQQLNVRDGRVNWRDEANASPAQNVQLSGIEIDAAQLST 413 Query: 421 AADAQPARLTLSAVENGHGKLGFDGQLQPLKPTLAGKITLDGVDLAGYQNYLARAPITDL 480 AA+AQPA L ++A+ENGHG+LGF+GQ+ PLKP +AGK+TL G+DLAGY+NYL RAP++ L Sbjct: 414 AANAQPATLKVTAIENGHGRLGFEGQVAPLKPAVAGKLTLAGIDLAGYRNYLHRAPVSGL 473 Query: 481 SGKLSGKTTLQLREGHLKLDDSSVQLADLRLTPPGQGAQPLSLSSLALQAPTLSDTLDQA 540 +GKLSG +TLQ R+GHLKLDDS+V+LA L+LTP G+ QP+S+ SL L+ ++DT DQA Sbjct: 474 AGKLSGNSTLQWRDGHLKLDDSTVELASLQLTPEGKSTQPISVESLKLRVQNVTDTFDQA 533 Query: 541 IPFKLQARFDQNGSAELSGQAAPHFKNVELELDIKDLPITPFQHYFSNVLNVTLSSGLAS 600 +P LQAR D+NGSA+++GQ APH KN +L+LD+++LPI P Q YF+++LNV++S+G S Sbjct: 534 MPLTLQARLDKNGSADITGQIAPHLKNADLDLDLRELPIAPVQGYFTDILNVSISNGALS 593 Query: 601 AKGKLAITPPLQERKLALDYKGSAAVTNLRMQDKRTGTDFLRWRTLELAGIQARLGGRPQ 660 AKGKLA+T PLQ++K ALDYKG+AA+ NLRMQDK T TDFLRWRTL LAGI A+LGGR Q Sbjct: 594 AKGKLALTLPLQQQKFALDYKGNAAIANLRMQDKLTSTDFLRWRTLTLAGINAKLGGRAQ 653 Query: 661 VSLEKVTLANFYARAILSEQGRLNLQDIVVADAQQQGSITDDKKGSKEAPASSATNARKT 720 ++L+KVTL +FYARAILSE+GRLNLQDI+VAD Q QGSITDD K K+ + ++RK+ Sbjct: 654 IALDKVTLNSFYARAILSEKGRLNLQDILVADGQPQGSITDDSK--KDDKENRRDSSRKS 711 Query: 721 TSTAAVTSAAPTADTPIVQVGQVVLQGGNINYTDNFVKPNYTANMTGLAGTIGQISSEKP 780 S+ VTS A AD PIV+VGQVVL+GGNINYTDNFVKPNYTANMTGLAG+IG+ISSEKP Sbjct: 712 VSSTPVTSPAARADAPIVRVGQVVLEGGNINYTDNFVKPNYTANMTGLAGSIGEISSEKP 771 Query: 781 QPAPVNISGKIDNDAPLQISGALNPLFKPMYLDLKASANGVQLPRLTPYSAKYAGYPITK 840 QPAPVNISGKIDNDAPLQISGALNPLFKPMYLDLKASANGVQLPRLTPYSAKYAGYPITK Sbjct: 772 QPAPVNISGKIDNDAPLQISGALNPLFKPMYLDLKASANGVQLPRLTPYSAKYAGYPITK 831 Query: 841 GKLSMDVQYKIENDKLVAQNDLRIEQLTFGERVDSPNATNLPVMLAVSLLKDREGNINLN 900 GKLSMDVQYKIENDKLVAQNDLRIEQLTFGERVDSPNATNLPVMLAVSLLKDR GNINLN Sbjct: 832 GKLSMDVQYKIENDKLVAQNDLRIEQLTFGERVDSPNATNLPVMLAVSLLKDRNGNINLN 891 Query: 901 LPISGSLSDPEFSVGGIIVRVFVNLIVKAVTSPFALIGSMFRADEHIGDLHYIAFAPGSS 960 LPISGSLSDPEFSVGGIIVRVFVNLI KAVTSPFALIGSMFR+DE+IG+L YI F GS+ Sbjct: 892 LPISGSLSDPEFSVGGIIVRVFVNLIAKAVTSPFALIGSMFRSDENIGELRYIEFPAGSA 951 Query: 961 EIDDEVRKKLDALGYALHERPGIKLDITGRVDPQVDDQGLRREALERKMRGLKRADLIAK 1020 EID EVRKKLDALGY LHERPGIKLDI GRVDPQVDDQGLR+EALER+MRG KRA+LIA+ Sbjct: 952 EIDAEVRKKLDALGYVLHERPGIKLDIMGRVDPQVDDQGLRKEALERQMRGYKRAELIAR 1011 Query: 1021 EGQPSGPVRISAAERGKYLERVYKDSTFDKPRNMIGLTKSLPEAEMEKMILEHTDITQDD 1080 EGQPSGPVR++ ER KYLER YK++ FDKPRNMIGL +SLP AEMEK+ILEHT ++ DD Sbjct: 1012 EGQPSGPVRLTDVERSKYLERAYKEAKFDKPRNMIGLARSLPPAEMEKLILEHTQVSPDD 1071 Query: 1081 LRNLAQRRADQVRNYLQEQSIIEPARIFLIAPKLDGAGLPAQEPKARVDLTIQ 1133 LR+LAQRRADQVRNYLQEQS+IEPARIFLIAPKLDGAG+P +EPKARVDLTIQ Sbjct: 1072 LRSLAQRRADQVRNYLQEQSVIEPARIFLIAPKLDGAGIPDKEPKARVDLTIQ 1124 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,072,098 Number of extensions: 122984 Number of successful extensions: 387 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 382 Number of HSP's successfully gapped: 1 Length of query: 1133 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1037 Effective length of database: 1,165,310 Effective search space: 1208426470 Effective search space used: 1208426470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 136 (57.0 bits)