BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3607.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase [H...   387   e-109
gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase [H...    85   4e-18
gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirill...    54   7e-09

>gi|300312992|ref|YP_003777084.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score =  387 bits (995), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/217 (92%), Positives = 207/217 (95%)

Query: 1   MPLRPPRAILFDLDGTLADTAPDLAAAANFLRHERGLENAPYENLRPVASAGARGLIGAA 60
           MPLRPPRAILFDLDGTLADTAPDLAAAANFLR +RGLE+APYE LRPVASAGARGLIGAA
Sbjct: 1   MPLRPPRAILFDLDGTLADTAPDLAAAANFLRQQRGLEDAPYEQLRPVASAGARGLIGAA 60

Query: 61  LGIHPGDEEYEALRVRFLDRYQANMTTHSRLFDGIPELLAQLEARGIAWGIVTNKAARFT 120
           LGI PG++EYE LRVRFLDRYQANMTTHSRLFDGIPELL QLEARGIAWGIVTNKAARFT
Sbjct: 61  LGIRPGEDEYEELRVRFLDRYQANMTTHSRLFDGIPELLVQLEARGIAWGIVTNKAARFT 120

Query: 121 DVLAPQIGLGHAGCIVSGDTTPHSKPHPAPLLEAARRLQLPAADCWYVGDDLRDIQAGRA 180
           DVLAPQIGLGHAGCIVSGDTTPHSKPHPAPLLEAARRLQL   DCWYVGDDLRDIQAG+A
Sbjct: 121 DVLAPQIGLGHAGCIVSGDTTPHSKPHPAPLLEAARRLQLTPEDCWYVGDDLRDIQAGKA 180

Query: 181 ADMPTIAAAWGYCGHTEPAGWQADALLHEPLQILTLL 217
           A MPTIAAAWGYCGHTEPAGW+ADALLH PLQILTLL
Sbjct: 181 AAMPTIAAAWGYCGHTEPAGWEADALLHAPLQILTLL 217


>gi|300313180|ref|YP_003777272.1| phosphoglycolate phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 226

 Score = 85.1 bits (209), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 85/191 (44%), Gaps = 5/191 (2%)

Query: 7   RAILFDLDGTLADTAPDLAAAANFLRHERGLENAPYENLRPVASAGARGLIGAALGIHPG 66
           +A + DLDGT+ DTA D   A N +R + GL     E +      G   LI   L +   
Sbjct: 8   KAAIIDLDGTMLDTAADFHVAVNRMRDDLGLTPLSQETIVNFVGKGTENLIRRVLAVDYA 67

Query: 67  DEE----YEALRVRFLDRYQANMTTHSRLFDGIPELLAQLEARGIAWGIVTNKAARFTDV 122
           ++E    ++       + Y A    +S L+ G+ E L  L  +G+    VTNK   F   
Sbjct: 68  EDEAAQYFQQALAACTEHYLAINGDYSSLYPGVLEGLQALRNKGLRLACVTNKPLAFAVP 127

Query: 123 LAPQIGLGHAGCIV-SGDTTPHSKPHPAPLLEAARRLQLPAADCWYVGDDLRDIQAGRAA 181
           L  + GL     IV  GD+ P  KP P PLL+  +   L  A    +GD   D QA RAA
Sbjct: 128 LLQKKGLRDFFEIVYGGDSFPKKKPDPMPLLQVCQDFALAPAQVVAIGDSSNDAQAARAA 187

Query: 182 DMPTIAAAWGY 192
               +   +GY
Sbjct: 188 GCRVLNVPYGY 198


>gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 215

 Score = 54.3 bits (129), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 80/188 (42%), Gaps = 14/188 (7%)

Query: 6   PRAILFDLDGTLADTAPDLAAAANFLRHERGLENAPYENLRPVASAGARGLIGAALGIHP 65
           P  ++FD DGTL D+    A A +      G++  P + L     A  RG+  +    H 
Sbjct: 8   PALVIFDCDGTLVDSEVVAARAWSEYVATYGVQLTPEDAL-----ARFRGVSMSWCIAHV 62

Query: 66  GDEEYEALRVRFLDRYQANM----TTHSRLFDGIPELLAQLEARGIAWGIVTNKAARFTD 121
                +AL   F    +A M      H +  +G  E++ QL+   I + + +N      +
Sbjct: 63  AQLRGQALPAHFEQELRARMGVMLEQHLQPINGALEMVEQLQ---IPFALASNAPHHKIE 119

Query: 122 VLAPQIGL--GHAGCIVSGDTTPHSKPHPAPLLEAARRLQLPAADCWYVGDDLRDIQAGR 179
           +     GL     G I S       KP PA  L AA RL +P A C  V D L  +QAG 
Sbjct: 120 LCLRVTGLLPHFHGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQAGL 179

Query: 180 AADMPTIA 187
           AA M  IA
Sbjct: 180 AAGMKVIA 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 668,675
Number of extensions: 27170
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 4
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)