BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3605.p (204 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp... 317 6e-88 gi|300310091|ref|YP_003774183.1| outer membrane protein and rela... 86 3e-18 gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser... 85 4e-18 gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri... 85 4e-18 gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum se... 55 5e-09 >gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 203 Score = 317 bits (811), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 194/204 (95%), Positives = 196/204 (96%), Gaps = 1/204 (0%) Query: 1 MNKLAKLVFAAASAAIALSATAQETKDIKVRPGSLYLQDGRDVVTRSGYGLCWQTAFANG 60 MNKLAKLVFAAASAAIALSATAQETKDIKVRP SLYLQDGRDVVTRSGYGLCWQTA+ NG Sbjct: 1 MNKLAKLVFAAASAAIALSATAQETKDIKVRPNSLYLQDGRDVVTRSGYGLCWQTAYVNG 60 Query: 61 PCEEPPAPAPVAAAAPAPAPAPVAAPTSEKVTYAADAFFDFDKATLKPAGKAKLDELVSN 120 PCEEPPAPAPVAAAAPA A AAPTSEKVTYAADAFFDFDKATLKPAGKAKLDELV N Sbjct: 61 PCEEPPAPAPVAAAAPAAPAAA-AAPTSEKVTYAADAFFDFDKATLKPAGKAKLDELVGN 119 Query: 121 LKSINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPV 180 LK+INLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPV Sbjct: 120 LKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAYLVSKGVEANRVYTEGKGKSQPV 179 Query: 181 ADNKTAAGRAKNRRVEIEVVGTRK 204 ADNKTAAGRAKNRRVEIEVVGTRK Sbjct: 180 ADNKTAAGRAKNRRVEIEVVGTRK 203 >gi|300310091|ref|YP_003774183.1| outer membrane protein and related peptidoglycan-associated (lipo)proteins [Herbaspirillum seropedicae SmR1] Length = 271 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 45/101 (44%), Positives = 66/101 (65%) Query: 99 FDFDKATLKPAGKAKLDELVSNLKSINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAY 158 F+ +ATL P GK LDE+ + + + + +G+TD+ G A N LS+ RA++VKAY Sbjct: 169 FESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVKAY 228 Query: 159 LVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 199 L +KGV+ + + T G+G +PVA N TA GRAKNRR+E + Sbjct: 229 LGAKGVDESLLSTSGQGPDRPVASNATAEGRAKNRRIEFRI 269 >gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 84.7 bits (208), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 66/101 (65%) Query: 99 FDFDKATLKPAGKAKLDELVSNLKSINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAY 158 F+ +ATL P GK LDE+ + + + + +G+TD+ G A N LS+ RA++VKAY Sbjct: 165 FESGRATLTPEGKRILDEIAATMLQLKGRRVEIIGNTDNEGLRASNISLSLARADAVKAY 224 Query: 159 LVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 199 L +KGV+ + + T G+G +PVA N T+ GRA+NRR+E + Sbjct: 225 LSTKGVDDSLLTTSGQGPDRPVASNATSEGRARNRRIEFRI 265 >gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 84.7 bits (208), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 45/110 (40%), Positives = 63/110 (57%) Query: 90 KVTYAADAFFDFDKATLKPAGKAKLDELVSNLKSINLEVIIAVGHTDSIGSVAYNQKLSV 149 K+ +D FD +A +KP + LD + L + VGHTD+ GS A N LS+ Sbjct: 103 KLEIPSDISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSL 162 Query: 150 RRAESVKAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 199 +RA + YL S+GV ANR +G+G +P+ N + A RA+NRRVEI V Sbjct: 163 QRASRTRDYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEIFV 212 >gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum seropedicae SmR1] Length = 190 Score = 54.7 bits (130), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 48/104 (46%) Query: 96 DAFFDFDKATLKPAGKAKLDELVSNLKSINLEVIIAVGHTDSIGSVAYNQKLSVRRAESV 155 D F+ L PA + L + ++ +K + GH D+IGS N LS+RRA + Sbjct: 86 DLLFELGTDRLTPASQDALKKAIAEIKDFPAGEFVLTGHADNIGSETNNDALSLRRARLI 145 Query: 156 KAYLVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 199 + L V+A + GKG P K +NR VEI++ Sbjct: 146 ERELRRADVKALSIEVIGKGARDPRVPQKRGVAEPRNRFVEIKI 189 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.127 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 410,502 Number of extensions: 11406 Number of successful extensions: 52 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 5 Length of query: 204 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 123 Effective length of database: 1,236,335 Effective search space: 152069205 Effective search space used: 152069205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)