BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3600.p
         (443 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312985|ref|YP_003777077.1| 5-enolpyruvylshikimate-3-phosph...   889   0.0  

>gi|300312985|ref|YP_003777077.1| 5-enolpyruvylshikimate-3-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/443 (97%), Positives = 437/443 (98%)

Query: 1   MKQASYPRHIDLAPVHHVQGTVKLPGSKSISNRILLLAALSGGTTRIFDLLASDDTLVML 60
           MKQ SYPRHIDLAPVHHVQGTVKLPGSKSISNRILLLAALSGGTTRIFDLLASDDTLVML
Sbjct: 3   MKQPSYPRHIDLAPVHHVQGTVKLPGSKSISNRILLLAALSGGTTRIFDLLASDDTLVML 62

Query: 61  MALQTLGVKWEQIEGTQDYIVHGVNGVLPVHQADLFMGNAGTAIRPLTAALAVLGGDYTL 120
           MALQTLGVKWEQIEGTQDYIVHGVNGVLPVHQADLFMGNAGTAIRPLTAALAVLGGDYTL
Sbjct: 63  MALQTLGVKWEQIEGTQDYIVHGVNGVLPVHQADLFMGNAGTAIRPLTAALAVLGGDYTL 122

Query: 121 HGVPRMHERPIGDLVDALNAVGMRIDYTGNPGYPPLHIRRGQLTSSRMKVRGNVSSQFLT 180
           HGVPRMHERPIGDLVDALNAVGMRIDYTGNPGYPPLHIRRGQLTSSRMKVRGNVSSQFLT
Sbjct: 123 HGVPRMHERPIGDLVDALNAVGMRIDYTGNPGYPPLHIRRGQLTSSRMKVRGNVSSQFLT 182

Query: 181 ALLMAAPLMARDEAMQIEVVGELISKPYIEITLNLMRRFGVEIERDGWQQFTIKPGQHYR 240
           ALLMAAPLMAR+EAMQI+VVGELISKPYIEITLNLMRRF VE+ERDGWQQF IKPGQHYR
Sbjct: 183 ALLMAAPLMAREEAMQIDVVGELISKPYIEITLNLMRRFSVEVERDGWQQFIIKPGQHYR 242

Query: 241 SPGSIHVEGDASSASYFLAAGAITGGPLRVEGVGRDSIQGDVRFVEALEKMGATITMGEN 300
           SPGSIHVEGDASSASYFLAAGAITGGP+RVEGVGRDSIQGDVRFVEALE MGATITMGEN
Sbjct: 243 SPGSIHVEGDASSASYFLAAGAITGGPIRVEGVGRDSIQGDVRFVEALELMGATITMGEN 302

Query: 301 WIEASSNGPLKAIDADFNHIPDAAMTIAVAALYADGPSTLRNIASWRVKETDRLAAMATE 360
           WIEASSNGPLKA+DADFNHIPDAAMTIAVAALYADGPSTLRNIASWRVKETDRLAAMATE
Sbjct: 303 WIEASSNGPLKAVDADFNHIPDAAMTIAVAALYADGPSTLRNIASWRVKETDRLAAMATE 362

Query: 361 LRKLGAQVEEGADYLRVTPPAEIGTAAIDTYDDHRMAMCFSLAALDGALRRGNRIRINDP 420
           LRKLGAQVEEGADYL VTPPAEIGTA IDTYDDHRMAMCFSLA+LDGALRRGNR+RINDP
Sbjct: 363 LRKLGAQVEEGADYLTVTPPAEIGTATIDTYDDHRMAMCFSLASLDGALRRGNRVRINDP 422

Query: 421 KCVAKTFPDYFDVFKKIAEQTLI 443
           KCVAKTFPDYFDVFKKIAEQTLI
Sbjct: 423 KCVAKTFPDYFDVFKKIAEQTLI 445


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,428,652
Number of extensions: 60872
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,203,190
Effective search space: 427132450
Effective search space used: 427132450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)