BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3595.p
         (391 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312980|ref|YP_003777072.1| N-acetylglucosaminyl transferas...   771   0.0  

>gi|300312980|ref|YP_003777072.1| N-acetylglucosaminyl transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/391 (95%), Positives = 383/391 (97%)

Query: 1   MEFEFWWLLGIPVFFGLGWIAARVDINQLLSESRTLPRGYFKGLNFLLNEQPDKAIDAFI 60
           MEFEFWWLLGIPVFFGLGWIAARVDINQLLSESRTLPRGYFKGLNFLLNEQPDKAIDAFI
Sbjct: 1   MEFEFWWLLGIPVFFGLGWIAARVDINQLLSESRTLPRGYFKGLNFLLNEQPDKAIDAFI 60

Query: 61  EIVKLDPETVELHFALGNLFRRRGETERAIRVHQNLLARPDLPAEHQGHALYELGQDYLK 120
           EIVKLDPETVELHFALGNLFRRRGETERAIRVHQNLLARPDLPAEH GHALYELGQDYLK
Sbjct: 61  EIVKLDPETVELHFALGNLFRRRGETERAIRVHQNLLARPDLPAEHHGHALYELGQDYLK 120

Query: 121 AGLLDRAEETFNKLIDTPYSAQAGRALLEIYQREKEWERAISAAEILQATGAGGRQREIA 180
           AGLLDRAEE+FN+LIDT YSAQAGRALLEIYQREKEWERAISAAEILQATGAGGRQREIA
Sbjct: 121 AGLLDRAEESFNRLIDTQYSAQAGRALLEIYQREKEWERAISAAEILQATGAGGRQREIA 180

Query: 181 QFYCELAADELVRTNTEAAMALLEKALAADRKSVRATMLMGDALRAKGDIEGALETWRRV 240
           QFYCELAADELVRTNTEAAMALLEKALAADRKSVRATMLMGDALRA+GDIEGALETWRRV
Sbjct: 181 QFYCELAADELVRTNTEAAMALLEKALAADRKSVRATMLMGDALRAQGDIEGALETWRRV 240

Query: 241 EHQSVPHTALVAQRLMDGYIAVGRPQEGINLLRAYLAEAPSIDLLEVAFKAVLDADGIDA 300
           EHQSVPHTALVAQRLMDGY+AVGR QEGINLLRAYLAEAPSIDLLEV FKAVL+ DG+DA
Sbjct: 241 EHQSVPHTALVAQRLMDGYVAVGRVQEGINLLRAYLAEAPSIDLLEVVFKAVLEVDGVDA 300

Query: 301 ANVLVSDELRRTPTLLGLDKFLEARMMSAPQSVRPELAVVKTLVHGYTQKLARYQCSHCG 360
           AN+LVSDELRRTPTLL LDKFLEARMM+APQ+ R EL+VVKTLVHGYTQKLARYQCSHCG
Sbjct: 301 ANLLVSDELRRTPTLLALDKFLEARMMNAPQTARSELSVVKTLVHGYTQKLARYQCSHCG 360

Query: 361 FKARQFYWQCPGCSQWETYPPRRTEELNVMN 391
           FKARQFYWQCPGCS+WETYPPRRTEELNVMN
Sbjct: 361 FKARQFYWQCPGCSRWETYPPRRTEELNVMN 391


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,218,868
Number of extensions: 49697
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,207,925
Effective search space: 367209200
Effective search space used: 367209200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)