BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3583.p (269 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 540 e-155 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 294 4e-81 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 187 1e-48 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 180 9e-47 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 180 1e-46 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 540 bits (1391), Expect = e-155, Method: Compositional matrix adjust. Identities = 261/269 (97%), Positives = 265/269 (98%) Query: 1 MTPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGL 60 MTPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGL Sbjct: 1 MTPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGL 60 Query: 61 LQPSSGSVKVFGEPLNGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGQDEKSAEELGQ 120 LQPSSGSVKVFGE L GINRRAGYMFQAEALMPWRSALQNVIAGLQYRG +EK+A ELG+ Sbjct: 61 LQPSSGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGE 120 Query: 121 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE 180 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE Sbjct: 121 QWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENE 180 Query: 181 VLELWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMH 240 VL+LWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMH Sbjct: 181 VLDLWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMH 240 Query: 241 PRFVELHQQIWDVLRDEVLKGYQQQKRAA 269 PRFVELHQQIWDVLRDEVLKGYQQQKRAA Sbjct: 241 PRFVELHQQIWDVLRDEVLKGYQQQKRAA 269 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 294 bits (753), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 139/257 (54%), Positives = 192/257 (74%), Gaps = 3/257 (1%) Query: 2 TPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLL 61 TPA++ N++C F++ D R+ A+ + +++A GEFV+VVGPTGCGKST L++ GLL Sbjct: 19 TPAIELRNVSCRFITADGRAT--VALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLL 76 Query: 62 QPSSGSVKVFGEPLNGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGQDEKSAEELGQQ 121 +P+ G V+V G+P+NGI+ R G++FQ +A+ PWRS +NV AG +RGQ + A L + Sbjct: 77 KPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADE 136 Query: 122 WLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEV 181 W+ RVGL FGD YPHQLSGGMRKRVALAQT I P+I+LMDEPFSALD+QTR LM++E+ Sbjct: 137 WIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDEL 196 Query: 182 LELWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHP 241 L LW+A +V+F+THDL+EAIA++D+V VL A P T + IDLPRPR + E+R Sbjct: 197 LRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLK-SVYPIDLPRPRVMEEVRYEQ 255 Query: 242 RFVELHQQIWDVLRDEV 258 RF+++ ++IW LR+EV Sbjct: 256 RFIDISRRIWADLREEV 272 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 187 bits (474), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 107/272 (39%), Positives = 165/272 (60%), Gaps = 16/272 (5%) Query: 2 TPALQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLL 61 +P ++ + F DDR A+ + +L I G+FV ++GP+GCGKSTLLN AG Sbjct: 7 SPRIRIQGVHKVF-KTDDRE--VVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFA 63 Query: 62 QPSSGSV----KVFGEPLNGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGQDEKSAEE 117 PSSG + KV EP G +R G +FQ AL PW + QNV GL+ +G + + Sbjct: 64 LPSSGQILTDDKVVSEP--GPDR--GMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQ 119 Query: 118 LGQQWLARVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLM 177 Q L ++GL F R+P LSGGMR+RVA+A+ L LD I+LMDEPF ALD TR+ + Sbjct: 120 RVTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNL 179 Query: 178 ENEVLELWNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEI 237 ++E+L +W+ +K ++F+TH ++EAI ++DR++V+ PGT + ++LPR RD A+ Sbjct: 180 QDELLRIWDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVK-RDMLVNLPRLRDPAD- 237 Query: 238 RMHPRFVELHQQIWDVLRDEVLKGYQQQKRAA 269 P F L +++ ++ +E + + + +AA Sbjct: 238 ---PEFNALKRELGQLVMEEQQRHHNAEMKAA 266 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 180 bits (457), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 99/254 (38%), Positives = 145/254 (57%), Gaps = 7/254 (2%) Query: 5 LQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPS 64 L+ +N + F +D QR A+ L I G FV +G +GCGKSTLLN AG L S Sbjct: 2 LKVENASVYFSGRD--KQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLS 59 Query: 65 SGSVKVFGEPLNGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGQDEKSAEELGQQWLA 124 G + + G+P++G G +FQ ++L+PW+S NV GL++ G + + E Q+ L Sbjct: 60 EGRISLDGQPVSGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLR 119 Query: 125 RVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLEL 184 VGLQ F P++LSGGMR+RV LA+ L +P I+LMDEPF ALD TR+ M+ ++ + Sbjct: 120 LVGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSV 179 Query: 185 WNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPR----PRDVAEIRMH 240 W K V FITH ++EA+ + VIV++ PG + F D R + I+ Sbjct: 180 WARTGKQVFFITHSIEEALFLGTEVIVMSPRPG-RIVARFETDFVRRFAAGCEARAIKTE 238 Query: 241 PRFVELHQQIWDVL 254 P F EL ++I ++ Sbjct: 239 PAFAELREEIRAIV 252 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 180 bits (456), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 149/240 (62%), Gaps = 6/240 (2%) Query: 27 VANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSVKVFGEPLNGINRRAGYMF 86 +A DL I GEFV ++GP+GCGKSTLLN AG Q SG + V G+ + G G +F Sbjct: 22 MAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGF-QDVSGEISVDGKRVKGPGLDRGVVF 80 Query: 87 QA-EALMPWRSALQNVIAGLQYRGQDEKSAEELGQQWLARVGLQGFGDRYPHQLSGGMRK 145 Q+ EAL PW S +NV GL+ RG +++++ VGL+ D++P +LSGGMR+ Sbjct: 81 QSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSGGMRQ 140 Query: 146 RVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLELWNAKKKAVLFITHDLDEAIAM 205 R +A+ L+ +P ++LMDEPF ALD QTR+++++E+ +W + ++F+THD+ EAI + Sbjct: 141 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 200 Query: 206 SDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHPRFVELHQQIWDVLRDEVLKGYQQQ 265 +DRV+ + AGP H + LP PRD A+ P + L+ +I D + EV + + Q Sbjct: 201 ADRVVTMTAGPRAHIKTIEEVHLPHPRDPAD----PACMALYARIRDDIGAEVTRVLRAQ 256 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 882,330 Number of extensions: 38613 Number of successful extensions: 491 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 328 Number of HSP's successfully gapped: 131 Length of query: 269 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 185 Effective length of database: 1,222,130 Effective search space: 226094050 Effective search space used: 226094050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)