BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3581.p
         (847 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313600|ref|YP_003777692.1| methyl-accepting chemotaxis pro...   665   0.0  

>gi|300313600|ref|YP_003777692.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 882

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/836 (42%), Positives = 519/836 (62%), Gaps = 20/836 (2%)

Query: 6   QSQHFLRHMPAIVDCERALRELSGAWRLIESTTKMVCPAEAKSILPTIKITREGFNQLEK 65
            ++ FL +M  +  CE++L+EL+  WR+IE++ KM CPAEAKSILPT+  TR GF++LE+
Sbjct: 21  HTETFLPYMRDVARCEQSLQELNQMWRIIEASAKMNCPAEAKSILPTMAATRSGFSRLER 80

Query: 66  RLIANLVEQNISKVVQEFDFKARVIIDIVVRNLFERTADVGFLAMDDAIRSFILEGPEAD 125
            L+++L  + +  V+ E   KAR +IDIVVRNLFERTADVGFLA D  + +F+      D
Sbjct: 81  ELVSSLAHEKVRNVLAEIGTKARYVIDIVVRNLFERTADVGFLATDRELCNFV--AGLTD 138

Query: 126 SREIVE-RLQAYRQKYTVYDEIFILDTEGRVLAHLDQDNAVECSYDPLVARTLAAAGYVE 184
           S E    RL+ YR KYTVYDEI +LDTEG VL  +D    +E S DPL+ +TL +  YVE
Sbjct: 139 SVEATRYRLREYRNKYTVYDEIILLDTEGNVLVQIDPTTPLEHSADPLIRQTLESDTYVE 198

Query: 185 TFAVSDLR-GGQRALIYSHKIVDPADGQPIGVLCLCFPVAVEMNDIFSGLRKPHDRSVML 243
           TF  +DLR   +RAL+YS ++  P  G  IGVLCLCF    EM  IF+    P  RS ML
Sbjct: 199 TFRATDLRPAKERALVYSRRMHHPQTGAVIGVLCLCFHFEEEMAGIFAAHGDPQGRSNML 258

Query: 244 MLDGEGRVIASSDSQHVPVGCIVPLALEDSYQIVSHAGREYLARTCAARNYQGYSGP-GW 302
           +LDGE RVIAS+D+  +P G  VP+ ++   +++ H+GR+YL RT A+  YQGY GP GW
Sbjct: 259 LLDGENRVIASADALWIPPGSEVPVNIDGQPRLMMHSGRQYLVRTFASEGYQGYPGPTGW 318

Query: 303 FGHVMVACDLAFRQPNQDMLAQYDPQLLAGVMSHAKSFCPPLHDVTTMADAINHSLRRVV 362
            G VM+  D+AF     D L+Q  P++  G+++HA SFCPPLHD+ T A  I    +R+V
Sbjct: 319 QGQVMIPVDVAFNDSASDTLSQLAPEVAEGLLAHAHSFCPPLHDIMTAAKTI----QRIV 374

Query: 363 WNGKIMASGEAGDLLRLKAILQEISQTGDETNEVFRKSILDLYATALSANLQDGQYISRL 422
           WNG++M +G+ G++++LK IL +IS+TG+ +NE+F +SI DLY T L ++++D ++ + L
Sbjct: 375 WNGQVMTAGQRGEMIKLKTILDQISETGNRSNELFAQSIHDLYQTVLVSSMRDAEFTTSL 434

Query: 423 MVDIMDRNLYERANDCRWWSLTPRLRQIMAKEVRSAAELAEMTAILSAINALYTVYARLV 482
           MVD++DRNLYER++DCRWW+LTP LR ++A++  SA + A++++IL+AIN LYTVY RL 
Sbjct: 435 MVDLLDRNLYERSDDCRWWALTPELRSMLAQDQVSADDSAKISSILAAINRLYTVYTRLF 494

Query: 483 VFDAQGRIVATSSPLADGSELIGTYVEPQLLRDTLHLTDASQYCVSPFAPTPLYDGAATY 542
           V+D  GRIVA++    +   ++G++++   L     L  A QY VSPF P+ LYDG  TY
Sbjct: 495 VYDRHGRIVASTGDALE--SVLGSHIDQTTLEAVSTLRSAQQYHVSPFGPSNLYDGRHTY 552

Query: 543 LYCAALFHPERAQAMGGIAVVFDATPEFANMLAGALPEHPGAFAAYTDRHGQVISSTHAD 602
           +Y AA+   ++   +GGI +VFDA PE  NML   L       A Y  R G+++SST A 
Sbjct: 553 IYHAAIRALDQDAVVGGIGIVFDAEPELRNMLVAGLSGKQRMSAFYVSRDGRILSSTDAA 612

Query: 603 YPPGSVLPLGSKASAGANGSSTADIRIHEGSYMVVGHTTSFGYREYKNDGQYVNDVIASV 662
            P G  L + +      +G+  + + +H+G Y +V  + S GYRE+K    Y  DVIA V
Sbjct: 613 RPVGGTLEIDATMLQLDHGAHRSGVTLHDGQYAIVATSASSGYREFKTSDGYQEDVIAVV 672

Query: 663 F-----VPIGQQSDAEPALESSSVEATPCTGPKREFASIRLDGATFALPAAQVVESIEAE 717
           F     +  G  S++  A +     A    G   E+A+   D + FA+ A  V+E++   
Sbjct: 673 FQCFGAINEGGTSNSSSAFQLEQDVAVNRNGEDLEYATFFSDHSLFAIAAVHVMEAVPYS 732

Query: 718 RMLSTST-FKPVLAGALDYQDGSGAASVFVPVVDMRQLLLGSSTAQHQGKEIIIVRHAGR 776
            +L TS   +P   G L  +   G    F+ V D+  L+ G+ +A     +++IV+H   
Sbjct: 733 EVLPTSMGSRPEQIGILGLER-EGQHRDFIWVFDLGFLIRGTRSAITSSSQVMIVQHGAH 791

Query: 777 TVGLLVDSLHDVLEFGEIH-IDAAFRIPGSEHNYICNLIRTADAGSTIQVIDVERI 831
           T+GLL D LH V +FG+   I   F + G E   + ++I+       IQ I V+R+
Sbjct: 792 TIGLLADELHAVPQFGQAQIIHTPFALQG-ESMLVSHVIKANGGQLLIQAIAVDRL 846


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,566,896
Number of extensions: 107574
Number of successful extensions: 307
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 1
Length of query: 847
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 754
Effective length of database: 1,179,515
Effective search space: 889354310
Effective search space used: 889354310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)