BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3580.p (523 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sen... 643 0.0 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 396 e-111 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 392 e-110 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 390 e-109 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 382 e-107 >gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/523 (68%), Positives = 441/523 (84%), Gaps = 1/523 (0%) Query: 1 MDFRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRA 60 MDF RL VSSRL GFG VL L+L+I+ +AL K+ ++++QL SIT+VNN E+ LS MRA Sbjct: 1 MDFTRLTVSSRLKFGFGVVLFLILLIVGIALKKLAEVNRQLVSITEVNNVEIYHLSTMRA 60 Query: 61 AVFEQSLASRGILMSTTSEELKQYADLLPQQISIYSEAEKTLAKMFAEAPDTTDTEKKAI 120 A +EQSLASRGI ++ T E+L Q A+ L +QI +Y+++E LAK+FA+ +TTDTEK+A+ Sbjct: 61 AAYEQSLASRGIGLALTPEDLNQNANNLQRQIGLYTQSEAALAKLFADLQETTDTEKQAL 120 Query: 121 ILIQQQSAEVLPRLQQLIKAVRDNDSDAIKAVLAASPLSRLQAQRRATLAELARFEDKLN 180 IQ+ SA + P L +I + ++ +K ++ PL ++QA RR LAEL+ FEDKLN Sbjct: 121 AAIQKMSAGLSPGLSNMIDLAKAQKTEELKPIMTG-PLGKMQADRRKALAELSAFEDKLN 179 Query: 181 GEARDDAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVVKQLGGEPADAAELASLIAK 240 EA+D+A A+ +AR+L++ LGV+ALL G+++A+LI RSV++QLGGEPA A+ LA+ IAK Sbjct: 180 NEAKDEALAVSASARKLLIALGVIALLCGLMAAVLITRSVLRQLGGEPAYASRLAAQIAK 239 Query: 241 GDLRREVNVASADPASLMMSMKSMNTALRDIVREVRAGTDAITTASTEIAAGNLDLSSRT 300 GDLR EV + P SLMMSMK+MN LR IVREVR+GTDAI TAS++IA+GNLDLSSRT Sbjct: 240 GDLRTEVKADTRHPESLMMSMKTMNEGLRGIVREVRSGTDAIATASSQIASGNLDLSSRT 299 Query: 301 EEQASSLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVASESGQLVQEVVSTMAAID 360 EEQASSLE+TASAMEQL ATVK NADSAG+AN+LA +ASAVAS+SGQLV+EVV+TMAAI+ Sbjct: 300 EEQASSLEETASAMEQLTATVKQNADSAGEANRLAAEASAVASQSGQLVKEVVTTMAAIE 359 Query: 361 ASSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSTAAR 420 SSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSS AAR Sbjct: 360 DSSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSSAAAR 419 Query: 421 EIKALIDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIGAISAASSEQSKGIDEINH 480 EIKALIDDSVDKVA+GSALVN+AG TM +VV+SV+RVVSVIGAIS +S+EQSKGI EINH Sbjct: 420 EIKALIDDSVDKVASGSALVNRAGDTMSDVVSSVDRVVSVIGAISDSSAEQSKGIQEINH 479 Query: 481 AIAQMDQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVFVVA 523 AI+QMDQVTQQNAALVE+AAAASQ+LQAQAR+LSGVVEVF VA Sbjct: 480 AISQMDQVTQQNAALVEEAAAASQALQAQARRLSGVVEVFAVA 522 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 396 bits (1017), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/515 (47%), Positives = 346/515 (67%), Gaps = 1/515 (0%) Query: 6 LKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRAAVFEQ 65 +K+ +RL LGF V+LLL+++ + M Q+ + + + +V N E + M V E+ Sbjct: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 Query: 66 SLASRGILMSTTSEELKQYADLLPQQISIYSEAEKTLAKMFAEAPDTTDTEKKAIILIQQ 125 S++ R +++ E++ A + Q Y A + L ++FAE+ DT+D EK A+ I Sbjct: 65 SISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKIAA 124 Query: 126 QSAEVLPRLQQLIKAVRDNDSDAIKAVLAASPLSRLQAQRRATLAELARFEDKLNGEARD 185 Q+++ + + ++ + ++ + L L +Q + L LA ED+LN EA + Sbjct: 125 QASKAEKLINEAVEFGKRREAYELAQFLKEQYLP-VQKSWQVELKALAALEDQLNKEAAE 183 Query: 186 DAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVVKQLGGEPADAAELASLIAKGDLRR 245 + Y AR L++ + + ++ +++A + R ++++LGGEP A ++A IA+GDL Sbjct: 184 ASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAV 243 Query: 246 EVNVASADPASLMMSMKSMNTALRDIVREVRAGTDAITTASTEIAAGNLDLSSRTEEQAS 305 ++ + D SLM +M+ M L IV EVR G++ ITTAS+EIA GNLDLS RTE+QA Sbjct: 244 VIDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAG 303 Query: 306 SLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVASESGQLVQEVVSTMAAIDASSKK 365 +LE+TAS+MEQL +TVK NA++A QAN LA AS VA + G +V +VV TM +I+ASS+K Sbjct: 304 ALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQK 363 Query: 366 IVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSTAAREIKAL 425 + DI+SVIDGI+FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS++AA+EIK L Sbjct: 364 VADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVL 423 Query: 426 IDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIGAISAASSEQSKGIDEINHAIAQM 485 I DSV KV GS LV QAG TMH++VTS+ RV V+ I+ A+ EQS GI+++N AI Q+ Sbjct: 424 IGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQI 483 Query: 486 DQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVF 520 D +TQQNAALVEQAAAA++SLQ QA L +V VF Sbjct: 484 DDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVF 518 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust. Identities = 239/517 (46%), Positives = 338/517 (65%), Gaps = 1/517 (0%) Query: 6 LKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRAAVFEQ 65 LKV +RL LGFG +L+ LL I ++ L M +++ L+ ITDVNNAE++ ++ +R A+ ++ Sbjct: 4 LKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQR 63 Query: 66 SLASRGILMSTTSEELKQYADLLPQQISIYSEAEKTLAKMFAEAPDTTDTEKKAIILIQQ 125 +LA R I + +++ + L +Q +Y++A L KMF TT+ E++ ++ I+ Sbjct: 64 ALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIKN 123 Query: 126 QSAEVLPRLQQLIKAVRDNDSDAIKAVLAASPLSRLQAQRRATLAELARFEDKLNGEARD 185 A LP + + ++ +N + +L + QA + +L ELA FED+LN EA Sbjct: 124 DEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIK-SLTELAEFEDQLNDEAAT 182 Query: 186 DAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVVKQLGGEPADAAELASLIAKGDLRR 245 A+ Y R + V + ALL+G+ ++ LI RS+++QLG EP++A +A IA GDL Sbjct: 183 SARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDLTA 242 Query: 246 EVNVASADPASLMMSMKSMNTALRDIVREVRAGTDAITTASTEIAAGNLDLSSRTEEQAS 305 V V D +SLM S++ M L I +++ + I+ AS +IA GN DLS RTEEQA+ Sbjct: 243 TVRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQAA 302 Query: 306 SLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVASESGQLVQEVVSTMAAIDASSKK 365 SLE+TA++ME+L TV+ N A +A +L+ A+ A+ Q VV TM I ASS K Sbjct: 303 SLEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASSSK 362 Query: 366 IVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSTAAREIKAL 425 + DIISVI+GI+FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS+ AA+EIK L Sbjct: 363 MSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIKEL 422 Query: 426 IDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIGAISAASSEQSKGIDEINHAIAQM 485 I +S+ V GS LV+ AGQ M ++V SV+R ++ I+ A+ EQ GI++IN A+ QM Sbjct: 423 IGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMVQM 482 Query: 486 DQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVFVV 522 DQVTQQNAALVE+A+AA+QSL QA L VV VF + Sbjct: 483 DQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 390 bits (1001), Expect = e-109, Method: Compositional matrix adjust. Identities = 240/518 (46%), Positives = 343/518 (66%), Gaps = 3/518 (0%) Query: 3 FRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRAAV 62 +LKVS+RL LGF SV++LL++I + L M + LS I NN + +M +V Sbjct: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIV-ANNQQGGLADVMNNSV 59 Query: 63 FEQSLASRGILMSTTSEELKQYADLLPQQISIYSEAEKTLAKMFAEAPDTTDTEKKAIIL 122 ++LA R I + + + + + Q Y +A + L KMF + PDTT E + L Sbjct: 60 RIRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMF-DQPDTTRREHELFDL 118 Query: 123 IQQQSAEVLPRLQQLIKAVRDNDSDAIKAVLAASPLSRLQAQRRATLAELARFEDKLNGE 182 I Q +A+ P + Q + + + S + ++L + +QA+ L EL RFED+LN + Sbjct: 119 IAQNAADTEPLMNQAVTLAQQDKSAELISLLT-QKIRPVQAKWLDNLDELGRFEDELNNQ 177 Query: 183 ARDDAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVVKQLGGEPADAAELASLIAKGD 242 A A Y++ TL ++LL + +A LI+RSV+ QLGGEPA A ELA+ IA+G+ Sbjct: 178 ASAAADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGN 237 Query: 243 LRREVNVASADPASLMMSMKSMNTALRDIVREVRAGTDAITTASTEIAAGNLDLSSRTEE 302 L + +A D SLM S+++M L IV ++ ++I+TA+++IA GNLDLS RTEE Sbjct: 238 LAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEE 297 Query: 303 QASSLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVASESGQLVQEVVSTMAAIDAS 362 QA+SLE+TAS+ME++ +TV+ N +AGQ +QLA AS A + G++V+ VV TM I S Sbjct: 298 QAASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQS 357 Query: 363 SKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSTAAREI 422 + KI +II+ ++GI+FQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS+++A+EI Sbjct: 358 AYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEI 417 Query: 423 KALIDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIGAISAASSEQSKGIDEINHAI 482 + LI+ SV V G LV++AG TM EVV S+++V ++ I+AAS+EQS GI +IN AI Sbjct: 418 RGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAI 477 Query: 483 AQMDQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVF 520 +QMD+VTQQNAALVE++A+A+QS+ QA L V VF Sbjct: 478 SQMDEVTQQNAALVEESASAAQSMAQQANSLRDAVAVF 515 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 382 bits (980), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/520 (46%), Positives = 345/520 (66%), Gaps = 13/520 (2%) Query: 3 FRRLKVSSRLMLGFGSVLLLLLIIISMALLKMDQIDQQLSSITDVNNAEVQQLSIMRAAV 62 F+ +K+ ++L LGFG++++L +++ ++L + + + ++ V + ++ L R A+ Sbjct: 2 FKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREAL 61 Query: 63 FEQSLASRGILMSTTSEELKQYADLLPQQISIYSEAEKTLAKMFAEAPDTTDTEKKAIIL 122 + +A+R + + + ++ ++ +Q +Y +A K L +FA + EK + Sbjct: 62 DQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFA---GNKEFEKVRSGM 118 Query: 123 IQQQSAEVLPRLQQLIKAVRDNDSDAIKAVLA--ASPLSRLQAQRRATLAELARFEDKLN 180 +Q PRL + S+ + L SPL R T+ LA+ E + N Sbjct: 119 LQMAEELKRPRLYR-----ESGRSEEYRDFLVNECSPLRRQIVSDIGTV--LAQVEAE-N 170 Query: 181 GEARDDAKALYKTARRLIVTLGVLALLLGMVSAILIIRSVVKQLGGEPADAAELASLIAK 240 A+D + + A + L ++ +++ ++ A+L+ R ++KQLGGEP AA++A IA Sbjct: 171 NRAQDATDKMAQLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIAD 230 Query: 241 GDLRREVNVASADPASLMMSMKSMNTALRDIVREVRAGTDAITTASTEIAAGNLDLSSRT 300 GDL V + D +SL+ ++K+M +L IV +VR GT I AS+EIA+GNLDLSSRT Sbjct: 231 GDLTANVQTKTGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRT 290 Query: 301 EEQASSLEQTASAMEQLVATVKNNADSAGQANQLAEQASAVASESGQLVQEVVSTMAAID 360 E+QASSLE+TASAME+L+ TVK NAD+A QA+QLA AS VAS+ G++V +VV+TM I+ Sbjct: 291 EQQASSLEETASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGIN 350 Query: 361 ASSKKIVDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSTAAR 420 ASS+KIVDIISVIDGI+FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS+TAA+ Sbjct: 351 ASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAK 410 Query: 421 EIKALIDDSVDKVATGSALVNQAGQTMHEVVTSVERVVSVIGAISAASSEQSKGIDEINH 480 EI LI+DSV ++ GS+LV QAGQTM VV SV+RV V+ IS AS EQS GI ++N Sbjct: 411 EITELINDSVSQIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNT 470 Query: 481 AIAQMDQVTQQNAALVEQAAAASQSLQAQARKLSGVVEVF 520 AI MD+ TQQN+ALVE+AAAA+ S++ QA LSG+V F Sbjct: 471 AITHMDEATQQNSALVEEAAAAANSMKEQAGALSGLVATF 510 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.124 0.306 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 909,300 Number of extensions: 26667 Number of successful extensions: 434 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 247 Number of HSP's successfully gapped: 71 Length of query: 523 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 433 Effective length of database: 1,193,720 Effective search space: 516880760 Effective search space used: 516880760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)