BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3577.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312967|ref|YP_003777059.1| SIR2 family NAD-dependent deace...   416   e-117

>gi|300312967|ref|YP_003777059.1| SIR2 family NAD-dependent
           deacetylase 3 protein [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  416 bits (1069), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/264 (83%), Positives = 239/264 (90%)

Query: 28  HRQVLVLTGAGISTASGIPDYRDDSGVRRGRLPIQGSQFRQSEAARQRYWARSMLGWPRL 87
           HRQV+VLTGAGISTASGIPDYRDD+GVRRGRLPIQG +FR+S AARQRYWARSMLGWPRL
Sbjct: 40  HRQVVVLTGAGISTASGIPDYRDDAGVRRGRLPIQGDEFRRSAAARQRYWARSMLGWPRL 99

Query: 88  AQAAPNAAHRALAQLQRAGHLGSILTQNVDGLHQLAGSTEVLELHGSIHAVRCLSCATVY 147
           AQAAPNAAHRALAQLQ+AG+LG+I+TQNVDGLHQ AGS EV+ELHGSIHAVRCL+CA+VY
Sbjct: 100 AQAAPNAAHRALAQLQQAGYLGAIVTQNVDGLHQQAGSGEVIELHGSIHAVRCLACASVY 159

Query: 148 PRAQIQQELARCNPAFTQWQAKALPDGDAELEPQAHARFHVPDCLACGGLLQPDVVFFGD 207
           PR QIQQELARCNPAFT  QA  LPDGDA+LEP+A A FHVPDC ACGG+LQPDVVFFGD
Sbjct: 160 PRTQIQQELARCNPAFTHLQAAPLPDGDAQLEPEADAAFHVPDCPACGGVLQPDVVFFGD 219

Query: 208 GVPAERSAQAEAAAQACDAMLVVGSSLMVLSGFRFARMVAAAGKPVVAINRGVTRADDLL 267
           GVPA RSAQAEAAA+ACDAMLVVGSSLMVLSGFR  RMVA AGKPV AINRGVTRAD LL
Sbjct: 220 GVPAARSAQAEAAARACDAMLVVGSSLMVLSGFRLPRMVAEAGKPVAAINRGVTRADALL 279

Query: 268 AFKLREDAELVLPRLAEWVLAHAA 291
           + KL+ DAE VLPRLA  + A +A
Sbjct: 280 SLKLQADAEAVLPRLAALLGAPSA 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 862,845
Number of extensions: 32714
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)