BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3576.p (429 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312963|ref|YP_003777055.1| o-acetylhomoserine sulfhydrylas... 824 0.0 gi|300312582|ref|YP_003776674.1| O-acetylhomoserine sulfhydrylas... 239 3e-64 gi|300312294|ref|YP_003776386.1| cystathionine beta-lyase [Herba... 135 5e-33 >gi|300312963|ref|YP_003777055.1| o-acetylhomoserine sulfhydrylase [Herbaspirillum seropedicae SmR1] Length = 429 Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/429 (96%), Positives = 422/429 (98%) Query: 1 MADNPQWKFETVSVHGGYDPDPTTRAVAVPIYQTVAFAFDDTQHGADLFDLKVQGNIYSR 60 M DNPQWKFET+SVHGGYDPDPTTRAVAVPIYQTVAFAFDDTQHGADLFDLKVQGNIYSR Sbjct: 1 MPDNPQWKFETISVHGGYDPDPTTRAVAVPIYQTVAFAFDDTQHGADLFDLKVQGNIYSR 60 Query: 61 IMNPTQDVLEKRLAALEGGIAALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLF 120 IMNPTQDVLEKRLAALEGGI ALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLF Sbjct: 61 IMNPTQDVLEKRLAALEGGIGALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLF 120 Query: 121 AHTLPQFGIQTRFADPRQPASFEPLIDARTKAIYIESIGNPLGNVTDIAAVAEIAHRHGV 180 AHTLPQ+G+QTRFADPRQPASFEPLID RTKAIYIESIGNPLGN+TDIAAVA+IAHRHGV Sbjct: 121 AHTLPQYGVQTRFADPRQPASFEPLIDDRTKAIYIESIGNPLGNITDIAAVADIAHRHGV 180 Query: 181 PLIVDNTVATPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWAQHKERFKR 240 PLIVDNTVATPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWA+HK+RFKR Sbjct: 181 PLIVDNTVATPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWAKHKQRFKR 240 Query: 241 LNEPDVSYHGVVYTEALGEAAYIGRARVVPLRNTGAALSPFNAFQILQGIETLALRLDRI 300 LNEPDVSYHGVVYTEALGEAAYIGRARVVPLRN GAALSPFNAFQILQGIETL LRLDRI Sbjct: 241 LNEPDVSYHGVVYTEALGEAAYIGRARVVPLRNMGAALSPFNAFQILQGIETLGLRLDRI 300 Query: 301 TANTLAVAQYLKRHPKVRWVNYAGLEDHPDHALAQKYFKGRASGVLTFGVANGRDGGARF 360 TANTLAVAQYLKRHPKVRWVNYAGLEDHPDHALAQ YFKGRASGVLTFGVANGR+GGARF Sbjct: 301 TANTLAVAQYLKRHPKVRWVNYAGLEDHPDHALAQTYFKGRASGVLTFGVANGREGGARF 360 Query: 361 QDALQLFTRLVNIGDAKSLATHPASTTHRQLSPGELEKAGVTEDTVRLSIGIEHIDDLLA 420 QDALQLFTRLVNIGDAKSLATHPASTTHRQLSP ELEKAGVTEDTVRLSIGIEHIDDLLA Sbjct: 361 QDALQLFTRLVNIGDAKSLATHPASTTHRQLSPTELEKAGVTEDTVRLSIGIEHIDDLLA 420 Query: 421 DLEQALQSA 429 DLEQALQSA Sbjct: 421 DLEQALQSA 429 >gi|300312582|ref|YP_003776674.1| O-acetylhomoserine sulfhydrylase [Herbaspirillum seropedicae SmR1] Length = 413 Score = 239 bits (610), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 226/431 (52%), Gaps = 21/431 (4%) Query: 1 MADNPQWKFETVSVHGGYDPDPTTRAVAVPIYQTVAFAFDDTQHGADLFDLKVQGNIYSR 60 M D + F T +H ++ PI+ +V F ++D + A++F K G Y R Sbjct: 1 MNDKKTYGFTTTILHSDRQKGIEHGSLHKPIHTSVTFGYEDARQLAEVFQGKQPGYRYGR 60 Query: 61 IMNPTQDVLEKRLAALEGGIAALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLF 120 NPT LE ++ +E G + + A+G AA+ +Q + GD++VS++ L+G T +L+ Sbjct: 61 QGNPTVAALEDKITKMEDGKSTICFATGMAAIGAIVQGLLREGDHVVSSAFLFGNTNSLW 120 Query: 121 AHTLPQFGIQTRFADPRQPASFEPLIDARTKAIYIESIGNPLGNVTDIAAVAEIAHRHGV 180 T+ G + D + E I A T+ +++E+I NP V D+ + E+ G+ Sbjct: 121 M-TVGAQGAKVSMVDATDVKNVEAAITANTRLVFVETIANPRTQVADLKRIGELCRERGI 179 Query: 181 PLIVDNTVATPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWAQH---KER 237 +VDNT+ +PYL RP GA +VV+SLTK +GGHG LGGA+ D+G+F W ++ E Sbjct: 180 LYVVDNTMTSPYLFRPKTVGAGLVVNSLTKSIGGHGNALGGALTDTGEFDWTRYPHIAEN 239 Query: 238 FKRLNEPDVSYHGVVYTEALGEAAYIGRARVVPLRNTGAALSPFNAFQILQGIETLALRL 297 +K+ P + + R LR+ G +L P A I G ET+ALR Sbjct: 240 YKKNPAPQWG---------------MAQIRAKALRDFGGSLGPEAAHHIAVGAETIALRQ 284 Query: 298 DRITANTLAVAQYLKRHPKVRWVNYAGLEDHPDHALAQKYFKGRASGVLTFGVANGRDGG 357 +R N LA+AQ L+ +V V Y GLE HP HAL++ F+ S +++F + +G D Sbjct: 285 ERECKNALALAQMLQADERVAAVYYPGLESHPQHALSKALFRSFGS-LMSFELKDGID-C 342 Query: 358 ARFQDALQLFTRLVNIGDAKSLATHPASTTHRQLSPGELEKAGVTEDTVRLSIGIEHIDD 417 + + L+L N+GD ++L A T ++ G+ E +R+S+G+E DD Sbjct: 343 FDYLNRLRLAIPTSNLGDTRTLVIPVAHTIFYEMGAERRASMGIAESLIRVSVGLEDTDD 402 Query: 418 LLADLEQALQS 428 L+AD QAL + Sbjct: 403 LVADFRQALDA 413 >gi|300312294|ref|YP_003776386.1| cystathionine beta-lyase [Herbaspirillum seropedicae SmR1] Length = 392 Score = 135 bits (341), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 119/421 (28%), Positives = 179/421 (42%), Gaps = 47/421 (11%) Query: 10 ETVSVHGGYDPDPTTRAVAVPIYQTVAFAFDDTQHGADLFDLKVQGNIYSRIMNPTQDVL 69 +T VH Y A V I+ F D + G Y PT VL Sbjct: 12 QTSLVHSSYRAPDGFEAFPVGIHHASTVLFPDVAAMRSRDWREKLGYTYGLHGTPTSFVL 71 Query: 70 EKRLAALEGGIAALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLFAHTLPQFGI 129 E RLA +EGG SG AA+ ++GD+++ +YG + +L F I Sbjct: 72 EARLAEIEGGKYCRVTPSGLAAIAMVNFAFLKSGDDVLLPDNVYGPSKDLGQWLERDFQI 131 Query: 130 QTRFADPRQPASFEPLIDARTKAIYIESIGNPLGNVTDIAAVAEIAHRHGVPLIVDNTVA 189 RF DP LI T+ ++ E+ G+ V DI A+ AH GV + +DNT + Sbjct: 132 TARFYDPMIGEGLAELIRPTTRLVWTEAPGSVSMEVPDIPALCRAAHAKGVLVAIDNTWS 191 Query: 190 TPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWAQHKERFKRLNEPDVSYH 249 + FEHG DIV+ ++TKY G L GA+ Sbjct: 192 AGIAFKAFEHGVDIVMQAVTKYQSGGSDVLMGAV-------------------------- 225 Query: 250 GVVYTEALGEAAYIGRARVVPLRNTGAALSPFNAFQILQGIETLALRLDRITANTLAVAQ 309 +V +AL E + R+ G + + + +L+ + ++ LR + A VA Sbjct: 226 -IVRDQALNEKLELAHMRL------GFGVGMDDVYMVLRSLSSMRLRFEAHDAAARKVAA 278 Query: 310 YLKRHPKVRWVNYAGLEDHPDHALAQKYFKGRASGVLT--FGVANGRDGGARFQDALQLF 367 +LK+ P++ V + ED P HA ++ F G A G+ + F RF D+L+LF Sbjct: 279 WLKQRPEIVAVLHPAFEDCPGHAHWKRDFSG-AGGLFSVIFDPRYVEAQTDRFVDSLRLF 337 Query: 368 TRLVNIGDAKSLATHPASTTHRQ--LSPGELEKAGVTEDTVRLSIGIEHIDDLLADLEQA 425 + G A SL R+ + G+L VR +IG+E +DL+AD+EQA Sbjct: 338 KIGYSWGGAHSLCVPYRMKGMRRAWMREGQL---------VRFNIGLESPEDLIADIEQA 388 Query: 426 L 426 L Sbjct: 389 L 389 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,357,161 Number of extensions: 57859 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 3 Length of query: 429 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 341 Effective length of database: 1,203,190 Effective search space: 410287790 Effective search space used: 410287790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)