BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3575.p (901 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspiri... 704 0.0 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 353 4e-98 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 348 7e-97 gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspiri... 317 3e-87 gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspiri... 243 7e-65 >gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 824 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/783 (47%), Positives = 506/783 (64%), Gaps = 16/783 (2%) Query: 9 QHQHNRLLRLSFPHDDAPSSTLMINRFHGTESMSRDFHFTLELLSDDAAISLESLMGKLV 68 Q QHNR+L+L F +DDAP + L+INR +E++SRD+ +TLELLSDDA I L+++MGKL+ Sbjct: 14 QRQHNRILQLFFINDDAPDAELLINRLEASEALSRDYVYTLELLSDDAHIPLDAMMGKLL 73 Query: 69 CVSLVLSDGGLRPFSGYVSSFRFVRTDGGIVFYEAVLVPWLHYARLRQNNRLFHEQSIEQ 128 V+L +DG R F+GYV F F+R+DGGI FYEA LVPWL + R NNR+FH S+E Sbjct: 74 RVALTRADGTQRHFTGYVERFAFLRSDGGIAFYEARLVPWLAFLASRHNNRIFHHLSLEG 133 Query: 129 QTESILKDYGILPRWRWQVAAEPHQYTMCTQWEESDHNYLSRRWEAEGYCYWYEHTEQGH 188 + +I + Y + RW Q+ T Q++ESD N L RRWE G+ Y YEH GH Sbjct: 134 LSAAIFRAYPMHARWDCQLRHGDPVRTEMFQFDESDSNLLHRRWEDAGWHYHYEHQADGH 193 Query: 189 TLVVADDSTAAQAIDGLSDAIRFHSKDGAQEEDAIAQWQAIRQWASSQVAVSGFDFKHPY 248 L ++DDST A+ IDG + + F GA EED +AQW A+RQ+ S +S +DFK Sbjct: 194 QLRLSDDSTYAKPIDG-TGQVPFQRHGGAIEEDGMAQWSAVRQFQPSSTRLSSYDFKAAR 252 Query: 249 PRHVDIATINQQGDIARMEVHSYAGHYGLRNFAHADQLARQRMEEIEARGLHYEAQGNHR 308 P+ V++ T+N+QG + ++E + YAG YG N D+ +R RMEE EA +E GN R Sbjct: 253 PQEVEVPTLNKQGAVLQVEHYEYAGAYGFANRDDGDRQSRLRMEEFEAAAQVFEGTGNCR 312 Query: 309 QVAAGRRFRLQDHFQVAA------DEEQFLILEVEHEASNNYLQGADVPATYRNRMRCQP 362 + GR FRL HF +A + + LI+ VEH A+NNYLQ ++ P Y NR+RC Sbjct: 313 FLQPGRTFRLTGHFSGSAASHDHDRDPELLIISVEHSATNNYLQDSETPPFYANRVRCVR 372 Query: 363 LPVPWRPGCGFDSIQTRILAPQTVVVVGPQAKGSLHVDQYGRVQLRFHWDR----QPSSS 418 +PWRPG + S T +L QT VVGP A +LHVD+YGRV+++FHWD+ SS Sbjct: 373 KRIPWRPGRSYYSQPTALLGIQTATVVGP-AGENLHVDEYGRVKVQFHWDQIGRNDERSS 431 Query: 419 CWVRVATNWAGAQSGLSSHPRVGAEVVVQWLDGNPDHPLVTGCVHNEANMPPWELPQQQA 478 W+RVA++W+G + GL S PR+G V+VQWL G+PD P++TG V N+ NMPPW LP Q A Sbjct: 432 AWLRVASSWSGGEQGLVSVPRIGQLVIVQWLGGHPDRPIITGSVVNQLNMPPWTLPSQSA 491 Query: 479 LSGLRSRELTPEGGNAAGGRSNHVILDDSWERMQVQIRSDHQSSQLSLGHITRIDDHAGR 538 LSG+RSREL P GNA GGRS HV+ DD+ E +Q Q+RSD SQL+LGHITRI+ HAGR Sbjct: 492 LSGMRSRELAPRTGNAPGGRSGHVLFDDTHEAIQTQVRSDAFDSQLALGHITRIERHAGR 551 Query: 539 KDGRGQGFELRTDGQGALRAQHGLLITTEGRPDAQGHITAMEETTARLEQSGQWHAELAH 598 +D RG+GFELRTD G +RA GLL+T+E RP A H T + ET ARL Q+ L+ Sbjct: 552 QDARGEGFELRTDAHGVVRAAQGLLLTSEPRPKAHRHTTDIGETVARLTQARGTVESLSK 611 Query: 599 AAQQAGAQ-QAGDQDVVAEALRQQNDAIRGQRKLADAGFPEFEQAHLTLASPVGIAAASG 657 AQ+ AQ + DQ A+A++ QNDAI+G FPE + HL L+SP GI A+SG Sbjct: 612 LAQEHEAQDKNADQYDAAQAIKAQNDAIKGDGAAKGGRFPELTEPHLVLSSPSGIEASSG 671 Query: 658 GSIHVSSQQHTALSSAAHASISAGKSLLVSVREAVRIFAYKAGMKLLAVAADIDISALRQ 717 S H++S +H AL++ +H S++AGKS S E + + AY+ G KL+A + ++I A Sbjct: 672 ASTHLASAEHAALTAGSHISLAAGKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQND 731 Query: 718 SVNIFAR--LNITHTANRISITAKEEIFINGGGSTLRLSQAGIHQCTSGHWHAHAAQYDH 775 + + A+ ++I T + I++ AK+ I +NGGGS L +++ GI T G H HAA + Sbjct: 732 GMELLAQKVVDIISTRDWINLKAKKGIRLNGGGSELVIAE-GITGFTQGAHHVHAADHQT 790 Query: 776 DGP 778 GP Sbjct: 791 LGP 793 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 353 bits (906), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 275/888 (30%), Positives = 425/888 (47%), Gaps = 104/888 (11%) Query: 11 QHNRLLRLSFPHDDAPSSTLMINRFHGTESMSRDFHFTLELLSDDAAISLESLMGKLVCV 70 QH RLL+L L+ R TE ++ + T++LL+ I+LE L+ + V + Sbjct: 18 QHRRLLQLD---SSLGPDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLIAQPVTL 74 Query: 71 SLVLSDGGLRPFSGYVSSFRFVRTDGGIVFYEAVLVPWLHYARLRQNNRLFHEQSIEQQT 130 + DG P GYV + + + +DG + F + L PWLH+ R R++ R++ ++ +T Sbjct: 75 WIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDK----RT 130 Query: 131 ESILKD-YGILPR----WRWQVAAEPHQYTMCTQWEESDHNYLSRRWEAEGYCYWYEHTE 185 E IL D + P+ +R+Q+ CTQ+E +D +++ R E EG W+ H E Sbjct: 131 EDILADVFNNHPQARGHYRFQLERPYTPRPYCTQYE-TDWHFVQRLMEEEG---WFAHHE 186 Query: 186 Q-----GHTLVVADDSTAAQAIDGL-SDAIRFHSKDGAQEEDAIAQWQAIRQWASSQVAV 239 Q GH LV+ D++ + GL I FH E D I W A R +S Sbjct: 187 QREDGSGHVLVITDNT---WNLPGLPQQGIAFHGAAPRDELDKILHWSASRTLSSKGWRG 243 Query: 240 SGFDFKHP-YPRHVDIATINQQGDI-ARMEVHSYAGHYGLRNFAHADQLARQRMEEIEAR 297 D+K P + + + + G + A++E++ Y G Y R ++ A ++E+ E+ Sbjct: 244 RSDDYKSPGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQVEQWESS 303 Query: 298 GLHYEAQGNHRQVAAGRRFRLQDHFQVAAD---EEQFLILEVEHEASNNYL---QGADVP 351 Y A R +A GR FRL++H Q A+ E QF+IL ++ NN Q D P Sbjct: 304 MQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPLSHQALDFP 363 Query: 352 ATYR----------------------------NRMRCQPLPVPWRPGCGFDSIQTRILAP 383 + + NR Q +P+RP ++ P Sbjct: 364 GSLKGALMAFKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPARAH---ARPVMLP 420 Query: 384 QTVVVVGPQAKGSLHVDQYGRVQLRFHWDR----QPSSSCWVRVATNWAGAQSGLSSHPR 439 QT +VVGP A ++ D R++++F WDR ++SCWVRV+ AG G PR Sbjct: 421 QTAIVVGP-ASEEVYTDHLDRIKVQFRWDRINPGNEAASCWVRVSYPNAGQYWGAIQVPR 479 Query: 440 VGAEVVVQWLDGNPDHPLVTGCVHNEANMPPWELPQQQALSGLRSRELTPEGGNAAGGRS 499 +G EV+V +L+G+PD P+VTG + N P W LSG++S+E G Sbjct: 480 IGQEVIVSFLNGDPDRPVVTGRLFNAEQRPQWHT--NGRLSGVKSKEF-------GGTGF 530 Query: 500 NHVILDDSWERMQVQIRSDHQSSQLSLGHITRIDDHAGRKDGRGQGFELRTDGQGALRAQ 559 N +++DD+ E+ ++ + S + +QL+LGH+ + R+ G GF L TD GA+ Sbjct: 531 NQMVMDDTPEQNRIHLYSTNTHAQLNLGHLVSQTGNE-RRSFFGSGFALSTDAYGAIVTH 589 Query: 560 HGLLITTEGRPDAQGHITAMEETTARLEQSGQWHAELAHAAQQAGAQQAGDQDVVAEALR 619 GL I+T GRP AQG E T +L+ L+ A +AGA+ Q EALR Sbjct: 590 KGLYISTYGRPGAQGTQLDAREATGQLKSGANLSRTLSETAAKAGAEPLAGQ----EALR 645 Query: 620 QQNDAIRGQRK-LADAGFPEFEQAHLTLASPVGIAAASGGSIHVSSQQHTALSSAAHASI 678 DA + + + A F+QA L ASP GI + +H + LSS A SI Sbjct: 646 DFIDATQADYEDPSQAQANRFQQAILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTSI 705 Query: 679 SAGKSLLVSVREAVRIFAYKAGMKLLAVAADIDISALRQSVNIFAR--LNITHTANRISI 736 + GKSLL SV E + +FA+KAG+KL + +++ A + + A + + R+ I Sbjct: 706 AVGKSLLASVAEKISLFAFKAGIKLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEI 765 Query: 737 TAKEEIFINGGGSTLRLSQAGIHQCTSGHWHAHAAQYDHDGPA------NEAVPALPDPP 790 AKEE+ I GGS +RL+ +GI Q TSG W A A + GP N++ ALP Sbjct: 766 RAKEEVLITAGGSFIRLNASGITQGTSGAWEAKAGTHAMPGPTTLAYEMNKSSAALP--- 822 Query: 791 AMSELKQQQRLSFQLKTHCAQGRGFMHEPYVLFKDGVQIAMGVSDAHG 838 ++ L + + R F ++ DG ++ GV+DA G Sbjct: 823 ----FDEEFVLRWPYDQSPVKNRRFE----IVRGDGTKV-RGVTDAQG 861 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 348 bits (894), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 247/818 (30%), Positives = 405/818 (49%), Gaps = 74/818 (9%) Query: 11 QHNRLLRLSFPHDDAPSSTLMINRFHGTESMSRDFHFTLELLSDDAAISLESLMGKLVCV 70 Q R+L+L L+ R G+E + R + +T++L+S I L+ L+ + V + Sbjct: 30 QEKRILKLD---SVLGPDVLLPQRMVGSERLGRGYDYTIDLVSTRDDIELKKLIAQPVTL 86 Query: 71 SLVLSDGGLRPFSGYVSSFRFVRTDGGIVFYEAVLVPWLHYARLRQNNRLFHEQSIEQQT 130 L P GYV + R + +DG + ++ + PWLH+ + R++ R++ + + Sbjct: 87 WLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDIL 146 Query: 131 ESILKDYGIL-PRWRWQVAAEPHQYTMCTQWEESDHNYLSRRWEAEGYCYWYEHTEQ--- 186 + + +R+++ + CTQ+E +D +++ R E EG WY + EQ Sbjct: 147 ADVFDQHAYARGNYRFEIVTPALPRSYCTQYE-TDWHFVQRLMEEEG---WYAYHEQKPD 202 Query: 187 --GHTLVVADDSTAAQAIDGLSDAIRFHSKDGAQEEDAIAQWQAIRQWASSQVAVSGFDF 244 GH LV+ D++ A+ + + + FH E + I W A R AS+++A D+ Sbjct: 203 GSGHVLVITDNTDQAKPL--APEQLAFHGAGTQDEVNRILHWSASRGLASTRLATRTDDY 260 Query: 245 KHPYP-RHVDIATINQQGDI-ARMEVHSYAGHYGLRNFAHADQLARQRMEEIEARGLHYE 302 K P + + + G + +EV+ Y+G Y D+ AR R+E+ E+ + Sbjct: 261 KSPGDQKQTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFM 320 Query: 303 AQGNHRQVAAGRRFRLQDHFQVAAD---EEQFLILEVEHEASNNY-LQGA--DVPATYR- 355 R +AAGR F L DH D + QF+++ VE NN L G D P + + Sbjct: 321 GVSGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTARDFPGSLKP 380 Query: 356 --------------------------NRMRCQPLPVPWRPGCGFDSIQTRILAPQTVVVV 389 NR Q +P+R FD + ++ PQT VVV Sbjct: 381 QLDAFKASMGRSNDDAGGNARTGHCFNRFEVQRRKLPYR--SPFDHTKP-VMHPQTAVVV 437 Query: 390 GPQAKGSLHVDQYGRVQLRFHWDR----QPSSSCWVRVATNWAGAQSGLSSHPRVGAEVV 445 GPQ + + D+ RV+++F WDR +SCWVRV+ AG G PRVG E++ Sbjct: 438 GPQGE-EVFTDKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRVGQELI 496 Query: 446 VQWLDGNPDHPLVTGCVHNEANMPPWELPQQQALSGLRSRELTPEGGNAAGGRSNHVILD 505 + +L+G+PD P+ TG + N+ P W + LSGL+S+E GGN N +++D Sbjct: 497 ISFLNGDPDRPVATGRLFNQEQPPQWHTDGR--LSGLKSKEF---GGNGF----NQLVMD 547 Query: 506 DSWERMQVQIRSDHQSSQLSLGHITRIDDHAGRKDGRGQGFELRTDGQGALRAQHGLLIT 565 D+ + +V + S ++QL+LG++ D+ R++ G GF L TD GA+ Q GL ++ Sbjct: 548 DTTSQNRVHLYSSQSNAQLNLGYLVSQADNE-RRNFYGSGFALSTDDYGAVVTQKGLYLS 606 Query: 566 TEGRPDAQGHITAMEETTARLEQSGQWHAELAHAAQQAGAQQAGDQDVVAEALRQQNDAI 625 + GRP QG E T+ ++ S L+ +A +AGA+ A QD + + + D Sbjct: 607 SYGRPGPQGTQLDASEATSLMKASADLARGLSDSASRAGAE-ALAQDSLKDFVDATEDKY 665 Query: 626 RGQRKLADAGFPEFEQAHLTLASPVGIAAASGGSIHVSSQQHTALSSAAHASISAGKSLL 685 GQ F++ L +A+P GI A+ V S Q T L+S SI++GKSLL Sbjct: 666 SGQ---GQGSANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLL 722 Query: 686 VSVREAVRIFAYKAGMKLLAVAADIDISALRQSVNIFAR--LNITHTANRISITAKEEIF 743 +V+E + +FA AGMKL A ++I A +++ A + T+ R+ I AK+E+ Sbjct: 723 ATVKEKISLFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVM 782 Query: 744 INGGGSTLRLSQAGIHQCTSGHWHAHAAQYDHDGPANE 781 I+ GGS ++++ AGI Q T G W A A+ + GPA++ Sbjct: 783 ISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGPASQ 820 >gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 966 Score = 317 bits (812), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 294/978 (30%), Positives = 456/978 (46%), Gaps = 126/978 (12%) Query: 11 QHNRLLRLSF-PHDDAPSSTLMINRFHGTESMSRDFHFTLELLSDDAAISLESLMGKLVC 69 Q+ R +RL + P + +L++ R E++ L +S D + L +L+G+ + Sbjct: 19 QNLRPIRLRWGPQEQRFEQSLLLQRVDIQETLLEGMQVQLTCVSTDPDLPLHTLLGQPLG 78 Query: 70 VSLVLSDGGLRPFSGYVSSFRFVRTDGGIVFYEAVLVPWLHYARLRQNNRLFHEQSIEQQ 129 V +V G L +G ++ DG + Y+ + L R N R+F S+ Sbjct: 79 VEMVTDRGRLHHTNGLITDACAGHADGALRVYQLTMRDALSIMEGRVNTRIFRRLSVPSI 138 Query: 130 TESILKDYGILPRWRWQVAAEPHQYTM-------------CTQWEESDHNYLSRRWEAEG 176 E +L ++ R R A ++ + Q+ ESD +++ R EG Sbjct: 139 LEILLSEW----RQRSSTLAAAFKFDLDGLDDTRYPAREISHQFNESDAHFIRRLCRREG 194 Query: 177 YCYWYEHTEQG-------------HTLVVADDSTAAQAIDGLSDAIRFHSKDGAQEE-DA 222 ++ +Q HTLV D A + +R+H +DGA EE DA Sbjct: 195 IAWYVASGQQADETAIATHADIPIHTLVFCDQP--ALLPRAAAGTVRYH-RDGATEERDA 251 Query: 223 IAQWQAIRQWASSQVAVSGFDFKHPYPRHVDIATINQQGDIARMEVHSYAGHYGLRNFAH 282 I+ W R V +D+K +I QGD + GL H Sbjct: 252 ISAWSRQRSLVPGSVWRRSWDYKAVRAEEASSHSIVDQGDAGYKLANILRD--GLIEAPH 309 Query: 283 AD-------QLARQRMEEIEARGLHYEAQGNHRQVAAGRRFRLQDHFQVAAD---EEQFL 332 A +LA RM EAR ++A G R +A G F L H + + +FL Sbjct: 310 AADSQNDHLRLADTRMLAHEARSESFDASGTVRDLAVGHWFLLDGHPDMRGQKPAQREFL 369 Query: 333 ILEVEHEASNNY---LQGAD---VPAT-------------YRNRMRCQPLPVPWRPGCGF 373 + ++ +A NN+ LQ A PA+ YRN++ C+ P P + Sbjct: 370 VTSLQQQAENNFPTVLQDAIRRLAPASPWKNLAHSAADLRYRNQLTCRRRTAPLAPH--Y 427 Query: 374 DS-IQTRILAPQTVVVVGPQAKGSLHVDQYGRVQLRF-------HWDRQPS-------SS 418 D + + P T +VVGP +K ++ D+ GR++++ H Q + S Sbjct: 428 DPRLHLPPVHPITALVVGP-SKEEVYCDELGRIKVQLQGLHPEDHAHAQGAGASGHEQDS 486 Query: 419 CWVRVATNWAGAQSGLSSHPRVGAEVVVQWLDGNPDHPLVTGCVHNEANMP-----PWEL 473 +VRV++ WAGA G + PRVG EV++ +L G+PD V G +HN N+P L Sbjct: 487 AFVRVSSAWAGAGYGHDAVPRVGMEVLIDFLGGDPDKMFVAGVLHNGINLPARFSHSGSL 546 Query: 474 PQQQALSGLRSRELTPEGGNAAGGRSNHVILDDSWERMQVQIRSDHQSSQLSLGHITRID 533 P + LSG++++E+ G R N + LDDS ++ Q+ S+HQ SQL+LG++T Sbjct: 547 PGNRFLSGIKTKEI-------GGARYNQLRLDDSPGQISTQLASEHQHSQLNLGYLTE-P 598 Query: 534 DHAGRKDGRGQGFELRTDGQGALRAQHGLLITTEGRPDAQGHI---TAMEETTARLEQSG 590 H GR + RG+G E RTDG G +RA G++IT + + +G + A+ ET L++ Sbjct: 599 RHGGRGEDRGEGLEARTDGHGVMRAAKGVMITAQSQDRGRGRMLERAALLETLDNLQELA 658 Query: 591 QWHAELAHAAQQAGAQQAGDQDVVAEALRQQNDAIRGQRKLADAG-----FPEFEQAHLT 645 Q L+H A + A+ DV Q + IR Q + DAG E + Sbjct: 659 Q---RLSHDAARHHAEAT---DVA------QLERIRAQLRAWDAGDVANGAVRAETPMVA 706 Query: 646 LASPVGIAAASGGSIHVSSQQHTALSSAAHASISAGKSLLVSVREAVRIFAYKAGMKLLA 705 + +P G++ S ++ + + QH L S A+ +SAG+ LL+ E + FA K MKL++ Sbjct: 707 VDAPAGVSITSQDTMVLGAAQHIDLVSRANTQLSAGRRLLMRAGEMLSAFAAKH-MKLIS 765 Query: 706 VAADIDISALRQSVNIFARLNITHTAN--------RISITAKEEIFINGGGSTLRLSQAG 757 I I A + +++ A I A+ +ISI ++E + GGGS R + + Sbjct: 766 GKGSIKIQAHEEHIDLSAARRILLEASEEIILQAPKISIRSRETTEVAGGGSFSRWNASA 825 Query: 758 IHQCTSGHWHAHAAQYDHDGPANEAVPALPDPPAMSELKQQQRLSFQLKTHCAQGRGFMH 817 I TSG W AA + GPAN P +P PP EL+Q L +L++H GR H Sbjct: 826 IEHGTSGEWRQQAAMHHVLGPANCPPPDIPPPPTYEELQQSSSLMVRLRSHARDGRLLAH 885 Query: 818 EPYVLFKDGVQIAMGVSDAHGLVVIEGHTPGPARYAVKLSNGCEFELPAKPGFESDDERL 877 +PY LFK G QIA+GV+DA G + I+ H PG Y+V+LSNG F+LP + D +L Sbjct: 886 QPYTLFKQGEQIAVGVTDAAGQLRIKDHQPGDDSYSVRLSNGYHFDLPVQEELGDLDHQL 945 Query: 878 VARGYRALYDDAQDLQRH 895 A GYR+ D++ RH Sbjct: 946 AASGYRSAETDSESRLRH 963 >gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 913 Score = 243 bits (619), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 254/930 (27%), Positives = 388/930 (41%), Gaps = 153/930 (16%) Query: 11 QHNRLLRLSFPHD-DAPSSTLMINRFHGTESMSRDFHFTLELLSDDAAISLESLMGKLVC 69 Q R +RL P A L++ G ES+ + L L+ ++LE + V Sbjct: 15 QKARAIRLRLPPSHQALQDALLVMHVTGRESLCGAMEYELLCLTSREDLALEDFVALPVE 74 Query: 70 VSLVLSDGGLRPFSGYVSSFRFVRTDGGIVFYEAVLVPWLHYARLRQNNRLFHEQSIEQQ 129 + LV G LR G+++ + D +V Y VL L R N R+F S Sbjct: 75 IQLVTDLGLLRTVCGFIAEAHAGQLDDELVSYRLVLRDALSLMGHRINTRVFLRASEADV 134 Query: 130 TESILKDYGILPRWR-------------WQVAAE---PHQYTMCTQWEESDHNYLSRRWE 173 T++++ + WR W + AE ++ M Q ESD ++L R W+ Sbjct: 135 TQALVSE------WRQRSPLMASSFEVDWSLLAERFPAREFIM--QHNESDADFLRRLWK 186 Query: 174 AEGYCYWYEHTEQG---------HTLVVADDSTAAQAIDGLSDAIRFHSKDGAQEEDAIA 224 G ++ E HTLV+ DD A Q + A+ + EED I Sbjct: 187 RRGISWFIRPGEPPLPHQAGSPRHTLVLFDD--AVQLPRNAAGAVSYRQDHAPAEEDGIV 244 Query: 225 QWQAIRQWASSQVAVSGFDFKHPYPRHVDIATINQQGDI----ARM--EVHSYAGHYGLR 278 +W R+ + V+ +D P + T+ +QG++ AR+ + A H Sbjct: 245 RWLGTRRLRAGSVSRHAWDHAQDGPMRSQVNTVAEQGELGDHFARLLDDYFIEAPHIA-D 303 Query: 279 NFAHADQLARQRMEEIEARGLHYEAQGNHRQVAAGRRFRLQDHFQV---AADEEQFLILE 335 + Q+A RM+ + ++A R + G ++DH ++ AA E +F+I Sbjct: 304 DREDFHQIATARMQRLAQETAEFQADSTIRALRVGEWIGVKDHPELDRRAAHEREFVITR 363 Query: 336 VEHEASNNYLQGAD-----------------VPAT---------YRNRMRC----QPLPV 365 +E A NN+ D P Y NR C PL Sbjct: 364 LEVYAENNFPASLDEHVRLVARHHDSSLEDLAPLRRRCLAQGRRYLNRFTCVRRGTPLVA 423 Query: 366 PWRPGCGFDSIQTRILAPQTVVVVGPQAKGSLHVDQYGRVQLRFHWDRQPS--------- 416 + P +++ Q VVGP A L+ D GR++LRFH R Sbjct: 424 AFDPRVDLPAVRV-----QNAHVVGP-AGEELYCDALGRIKLRFHGTRMQDHQHAGGAGA 477 Query: 417 -----SSCWVRVATNWAGAQSGLSSHPRVGAEVVVQWLDGNPDHPLVTGCVHNEANMPP- 470 S WVRVA++WAG Q G S PRVG EV+V +L G+PD P+V G V+N ++PP Sbjct: 478 SGSERDSAWVRVASHWAGRQWGAISLPRVGDEVLVDFLGGDPDKPIVVGRVYNGQSLPPA 537 Query: 471 ----WELPQQQALSGLRSRELTPEGGNAAGGRSNHVILDDSWERMQVQIRSDHQSSQLSL 526 LP + L+G++S+E+ G R N + LDD+ +++ Q+ S H S+L+L Sbjct: 538 FSRVGSLPGNRFLAGIKSKEIQ-------GQRYNQLRLDDTPQQISAQLASQHGQSELNL 590 Query: 527 GHITRIDDHAGRKDGRGQGFELRTDGQGALRAQHGLLITTEGRPDAQGHITAMEETTARL 586 G +T GR D RG+G ELRTD ALR G+LI+ R +A G E L Sbjct: 591 GWLTH-PRAGGRSDARGEGAELRTDQALALRGGQGVLISAVMRQEASGTQLDRAEMLGLL 649 Query: 587 EQSGQWHAELAHAAQQAGAQQAGDQDVVAEALRQQNDAIRG----QRKLADAGFPEFEQA 642 +LA AQ A Q LR Q DA Q K G P Sbjct: 650 HVLQDVQQQLATLAQTHHADDTQLQTF--SRLRDQLDAWEAGSNTQAKSDGGGKP----- 702 Query: 643 HLTLASPVGIAAASGGSIHVSSQQHTALSSAAHASISAGKSLLVSVREAVRIFAYKAGMK 702 + + +P G+A S + + +Q+ L S + SAGK LL V E++ +FA + G++ Sbjct: 703 MVAVTAPAGVAITSDEGVALGAQKEIDLISVGNTQFSAGKKLLARVAESICLFAQRLGIQ 762 Query: 703 LLAVAADIDISALRQSVNIFARLNITHTANRISITAKEEIF--------------INGGG 748 L+A + + V + +A RI +TA +EI I+ GG Sbjct: 763 LVAANGKLQLQTHGGDVEVT-------SARRIVLTAADEIVLQAPRLRLQAQGAQIDLGG 815 Query: 749 STLRLSQAGIHQCTSGHWHAHAAQYDHDGPANEAVPALPDPPAMSELKQQQRLSFQLKTH 808 + +G H SG++H H + D P E +PA S ++ +R + Sbjct: 816 GVITQQSSGDHVIRSGNFH-HVSGADSQPPGVE-LPA-------STMRTDERFILARR-- 864 Query: 809 CAQGRGFMHEPYVLFKDGVQIAMGVSDAHG 838 GR + + Y + D + GV+D G Sbjct: 865 -GSGRPHVRQRYRIELDDGSVIEGVTDEQG 893 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,836,028 Number of extensions: 120328 Number of successful extensions: 419 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 352 Number of HSP's successfully gapped: 14 Length of query: 901 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 807 Effective length of database: 1,174,780 Effective search space: 948047460 Effective search space used: 948047460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)