BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3574.p
         (636 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309591|ref|YP_003773683.1| phospholipase [Herbaspirillum s...   638   0.0  
gi|300309589|ref|YP_003773681.1| phosphatidylserine/phosphatidyl...   174   2e-44

>gi|300309591|ref|YP_003773683.1| phospholipase [Herbaspirillum
           seropedicae SmR1]
          Length = 643

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/659 (50%), Positives = 421/659 (63%), Gaps = 45/659 (6%)

Query: 4   THKKSIVPLSEAQPHSEGSAQWLLESEHDKATPIHRCNRLRMLYCGEQAFQQILADIKQA 63
           TH  S VPLS  +  +  +AQWLLE   D  +PI+  N+L +L CG++ F +IL DI++A
Sbjct: 4   THHPSSVPLSLRKRSATATAQWLLERAEDSNSPIYHANQLEVLICGKEGFARILQDIRRA 63

Query: 64  KDSVEIICWGFDPAMELVREATSWPRGDTWGGLLRDVAAGRYNGGKPVQVRLLSWYGVIG 123
           + SVEIICWGFDPAMEL R   +WPRG TWG LLR+VAAG+YN GKPV+VR+L W   + 
Sbjct: 64  RHSVEIICWGFDPAMELERNGDTWPRGPTWGDLLREVAAGKYNNGKPVEVRVLCWRENLA 123

Query: 124 SALAHNMPGYGKEADYELKQALTHGHASVIQPGGNGSIADPVEVRDRREVFNAHWYRDAE 183
           S +A N PGYG     ++K+   H   S  +P   G     +  ++RR  FNA W+ DA 
Sbjct: 124 STMAKNTPGYGTLNADQVKRIRHHERLSG-KPHDTG-----LTPQERRHHFNALWFSDAT 177

Query: 184 QGLMPNLSLRVRDGDISAVWGSLSQEAGKR-SLLETAGMVLVATDHQKSILIDYEHEGGV 242
            G+ P+L+ +VR GD   V  SL +E     +++E   +V V+T HQK+ILIDY+H  G 
Sbjct: 178 HGMHPHLTFKVRTGDADKVRQSLKEEKSTNLTMVEHHTLVQVSTAHQKTILIDYDHADGE 237

Query: 243 NAVAYVMDLNSVTDYWDTEDHLYHDRRRGELWEGRTEDGRPGLKPYQDYACRIEGEALVS 302
           +AV YVM LNSVTDYWDT +HL++D RRG  WEG  +D  PGLKP QDYACRI GE L+S
Sbjct: 238 HAVGYVMGLNSVTDYWDTREHLFYDPRRGHSWEGGGDD-LPGLKPLQDYACRICGETLIS 296

Query: 303 VSKNFTDAWNRAKGKGAALARTHDLYQPPADLCASLDGQRTVNAQIVRTQPEEGDKSIKR 362
           VSKNF DAWNR       + RTHDL  PPA L  S +   T  AQIVRTQPEEGDK+I+R
Sbjct: 297 VSKNFVDAWNRVATANQKIKRTHDLRSPPAGLKKSANNS-THRAQIVRTQPEEGDKTIQR 355

Query: 363 LYRQASSFARNYLYVENQYFQYEPWVQQFKEDRRNFVEWWQLAGQSMDALPNLHVMVVMP 422
           LYRQA+SFA NY+Y+ENQYFQY  W +  K+ RR+F+  W+ AGQ M  LP+LHV +V+P
Sbjct: 356 LYRQATSFASNYIYIENQYFQYTEWAKYLKQLRRDFIAAWKAAGQPMKKLPDLHVFIVIP 415

Query: 423 LPELKQMVPRTYDAVRSLGQGDSMPNQDKL-----------------IEDALKASGPSGE 465
            PE  QMVP T+D V++LG G SMPNQDK                  +E         G 
Sbjct: 416 TPERTQMVPATHDTVKALGHGASMPNQDKELERELAEERAHQERMKEVERHEFKEREDGA 475

Query: 466 PSELAKSAAA------GGSKDEVVRQLNMLGIRTLIGTLWTYDHAWRGRASLQQNVAPKM 519
           P EL +   A        S  ++ ++L+ LGI+TL+ +LWTYDH    +           
Sbjct: 476 PPELVRKPKALTPNTNPRSNADIAKELDSLGIKTLVASLWTYDHDGVSKG---------- 525

Query: 520 EERYREIYIHSKLMIIDDAMFTVGSANLNLRSMAGDAEMNVACDDPVLSREIRRHVWGRH 579
            E+YREIYIHSKLMIIDDA FT+GSANLNLRSMA DAE+N+ CDDP LS ++RR V+  H
Sbjct: 526 -EKYREIYIHSKLMIIDDAFFTLGSANLNLRSMAVDAEINIGCDDPRLSEKLRREVFSLH 584

Query: 580 TGGMQ--DGGGGSREEISNAFFKWKKLMDINDFERKIGEPPVGFLFSFKDERVSTTRLA 636
            G  +  DGG GS   I+N F  W++L+  N  +R+    PVGFL  F+D+R S  R A
Sbjct: 585 AGNSEQSDGGDGSSTSIANTFILWERLLITNKVKREEKNSPVGFLIPFEDKRTSKIRFA 643


>gi|300309589|ref|YP_003773681.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 222

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/233 (42%), Positives = 128/233 (54%), Gaps = 36/233 (15%)

Query: 429 MVPRTYDAVRSLGQGDSMPNQDKLIEDALK-----------------ASGPSGEPSELAK 471
           MVP ++D V++LG G SMPNQDK +E  L                       G P EL +
Sbjct: 1   MVPASHDTVKALGHGTSMPNQDKELESELARERAHQERMKEVERHEFKEREDGAPPELVR 60

Query: 472 SAAA------GGSKDEVVRQLNMLGIRTLIGTLWTYDHAWRGRASLQQNVAPKMEERYRE 525
              A        S  ++ ++L+ LGI+TL+ +LWTYDH    +            E+YRE
Sbjct: 61  KPKALTPNTNPRSNADIAKELDSLGIKTLVASLWTYDHDGVSKG-----------EKYRE 109

Query: 526 IYIHSKLMIIDDAMFTVGSANLNLRSMAGDAEMNVACDDPVLSREIRRHVWGRHTGGM-- 583
           IYIHSKLMIIDDA FT+GSANLNLRSMA DAE+N+ CDDP LS+ +R  V+  HT     
Sbjct: 110 IYIHSKLMIIDDAFFTLGSANLNLRSMAVDAEINIGCDDPRLSKNLRSRVFTMHTDDAIR 169

Query: 584 QDGGGGSREEISNAFFKWKKLMDINDFERKIGEPPVGFLFSFKDERVSTTRLA 636
            +GG G    I  AF  W KL+  N   +   +P  GFL  F+D+R S  R+A
Sbjct: 170 CNGGDGGHHAIQEAFDAWVKLLSENRISKDDQKPCKGFLIPFEDKRTSNMRIA 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,119,507
Number of extensions: 93732
Number of successful extensions: 252
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 2
Length of query: 636
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 545
Effective length of database: 1,188,985
Effective search space: 647996825
Effective search space used: 647996825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)