BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3573.p (521 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1 sub... 456 e-129 gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1 sub... 444 e-126 >gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1 subfamily [Herbaspirillum seropedicae SmR1] Length = 518 Score = 456 bits (1172), Expect = e-129, Method: Compositional matrix adjust. Identities = 239/502 (47%), Positives = 318/502 (63%), Gaps = 9/502 (1%) Query: 1 MKNLPRNMSLRAFDPHRKEFVCKYQENILPRLDEEAERWFQEGLALTSHTLWPNQRDYVK 60 M + RNM L AFDPH +EF CKY+++ P LDE+AE WF+EG+A+TS+ LWP+ RDY + Sbjct: 1 MNDFTRNMPLAAFDPHSREFSCKYEKDSEPILDEQAEDWFREGMAVTSNDLWPDDRDYKR 60 Query: 61 AAQLWQQAADRNHWKAMLNLANSYAHGEGVRRDTERAVLILEKAMQLGIPAAFDVMGTYH 120 AA LW++AA +NHWKAMLNLA Y G G+ RDTE+AV+++E AM++G+P A+++MG YH Sbjct: 61 AASLWKKAAQKNHWKAMLNLAGLYLDGRGILRDTEQAVVLVEDAMKMGVPRAYELMGRYH 120 Query: 121 MRGIGVKQDVSRAYAFWQLAAEMGSPSAMAYLGSKTDAIY-DSPPAFWGNRKIALQMLEC 179 M G GV+Q+ +RAYAFW LAA +G A AYLG K +A Y D+ +FWGN+ IALQML C Sbjct: 121 MNGTGVQQNATRAYAFWALAANLGDAEAQAYLGGKLNATYDDANGSFWGNKSIALQMLRC 180 Query: 180 GLNQGNADAAFNLGGTIAGEKEEFEQDNERARLVLQEGVRLGSYMSATFLFGAFDDGEPL 239 Q NA+A+ NLG ++ E A +L +GVR GS SA +L +F L Sbjct: 181 SYAQENAEASLNLGVSL-----NVNGKYEDALNILHDGVRFGSKGSANYLAASFLIHTEL 235 Query: 240 SGVGKDKSRAERYFIISDALQRNPDLRFPNLDKILPLPPVNLPMWNGDRNTLLDAAKPVL 299 +G D+ RAERY I D L+ NPDLR PNLDK+LPLPP LP W+GD+ TL+D AKPV Sbjct: 236 TGQHVDQDRAERYKAIGDLLRLNPDLRLPNLDKVLPLPPAVLPYWDGDKQTLIDGAKPV- 294 Query: 300 QKPDAPPPPEPNPAWLRTGRAHIPPGRQLPAQPQIQVLPQYESTAAPQTGYWIARLMRPV 359 K + +P+PA LR GRAHIP G LP +PQ L Q+ T A +G+W+A+L +P Sbjct: 295 -KTASLDDIKPSPASLRQGRAHIPDGLVLPDEPQGGHLIQHLHTDAIISGFWLAQLAKPY 353 Query: 360 SDRHHAWNAEQLPLRYQQGELFDRSRSGLQDEDGRIQFHYLGEPVDLLPPVTVKDDPRVT 419 + + AWNA Q+P+ Y GE F + + +DG ++FHYLG P+ D RV Sbjct: 354 TPKQVAWNAAQVPMYYALGESF-TAPEDITKDDGVLRFHYLGTPIPKSLAERYVPDWRVP 412 Query: 420 RRAARYVEFPQIERRYRSHSPCPRSGIWRPYLPDEHPLHESFNRWDRQTYVRKGMPFPDV 479 + R V P E R P P +GIW + H L + FN W RQ YV +G FPD Sbjct: 413 QGVLREVPVPSRELRSSGLLPAPATGIWHGTIDPAHSLSKVFNLWTRQAYVEEGQSFPDP 472 Query: 480 IKQRPGIEPHELLWQWLGNANE 501 ++ I P ++ WQWL AN+ Sbjct: 473 RERGLDISPKDIQWQWLDQANQ 494 >gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1 subfamily [Herbaspirillum seropedicae SmR1] Length = 517 Score = 444 bits (1143), Expect = e-126, Method: Compositional matrix adjust. Identities = 239/505 (47%), Positives = 317/505 (62%), Gaps = 17/505 (3%) Query: 1 MKNLPRNMSLRAFDPHRKEFVCKYQENILPRLDEEAERWFQEGLALTSHTLWPNQRDYVK 60 M LPRNM+L+AFDPHRKEF C Y++ L+EEAE WF+EGLA TS LWP+ RDYVK Sbjct: 3 MHKLPRNMALKAFDPHRKEFPCNYEKYSETPLNEEAETWFREGLAATSFDLWPDDRDYVK 62 Query: 61 AAQLWQQAADRNHWKAMLNLANSYAHGEGVRRDTERAVLILEKAMQLGIPAAFDVMGTYH 120 AA+LW ++A+ HW+AMLNLA+ Y G+GV +DTERAV ++E+ M++GIP AFD MGT H Sbjct: 63 AAKLWSKSAEEKHWQAMLNLASLYIQGKGVGKDTERAVSLVEEVMKMGIPRAFDFMGTLH 122 Query: 121 MRGIGVKQDVSRAYAFWQLAAEMGSPSAMAYLGSKTDAIYDSPP-AFWGNRKIALQMLEC 179 + G GV+QD +RAYAFW LAAEMGS A AYLG + +A D P WGN+ +A +++EC Sbjct: 123 INGTGVRQDATRAYAFWSLAAEMGSADAQAYLGERLNASRDDPARETWGNKALAYKLMEC 182 Query: 180 GLNQGNADAAFNLGGTIAGEKEEFEQDNERARLVLQEGVRLGSYMSATFLFGAFDDGEPL 239 Q N AA LG ++ + D +RA +L +GV+ GS SA FL +F G+ Sbjct: 183 AHAQENGRAASILGLSLG-----LDGDQQRALNILHDGVKFGSEKSAIFLAVSFRAGDAT 237 Query: 240 SGVGKDKSRAERYFIISDALQRNPDLRFPNLDKILPLPPVNLPMWNGDRNTLLDAAKPVL 299 + D+ R +RY I+ L+ NPDLR PNLDK+LPLPP LP W+GD+ TL+D AKPV Sbjct: 238 AQHQVDQDRGDRYGAIAHLLRLNPDLRLPNLDKVLPLPPAILPYWDGDKQTLIDGAKPV- 296 Query: 300 QKPDAPPPPEPNPAWLRTGRAHIPPGRQLPAQPQIQVLPQYESTAAPQTGYWIARLMRPV 359 K + +P+PA LR GRAHIP G LP +PQ L Q+ T A +G+W+A+L +P Sbjct: 297 -KTASLADIKPSPASLRQGRAHIPDGLVLPDEPQGGHLIQHLHTDAIISGFWLAQLAKPY 355 Query: 360 SDRHHAWNAEQLPLRYQQGELFDRSRSGLQDEDGRIQFHYLGEPVDLLPPVTVKD----D 415 + + AWNA Q+P+ Y GE F + E G ++FHYLG P+ P ++ + D Sbjct: 356 TPKQVAWNAAQVPMYYALGESFTPPED-ITKESGVLRFHYLGTPI----PKSLAERHVPD 410 Query: 416 PRVTRRAARYVEFPQIERRYRSHSPCPRSGIWRPYLPDEHPLHESFNRWDRQTYVRKGMP 475 RV + R V P E R P P +GIW + HPL + FN W RQ YV +G Sbjct: 411 WRVPQGVLREVPVPSRELRSSGLLPAPATGIWHGTIDPAHPLSKVFNLWTRQAYVEEGQS 470 Query: 476 FPDVIKQRPGIEPHELLWQWLGNAN 500 FPD ++ I P ++ WQWL AN Sbjct: 471 FPDPRERGLEISPKDIQWQWLDQAN 495 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,795,454 Number of extensions: 80129 Number of successful extensions: 221 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 2 Length of query: 521 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 431 Effective length of database: 1,193,720 Effective search space: 514493320 Effective search space used: 514493320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)