BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3570.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312947|ref|YP_003777039.1| type 4 fimbrial pilin related t...   176   7e-46

>gi|300312947|ref|YP_003777039.1| type 4 fimbrial pilin related
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  176 bits (446), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 91/155 (58%), Positives = 115/155 (74%)

Query: 1   MRKHGFTLIELLVVLLITALILAAGVPVLRDLSSEQQLATVGNDFFHAVQLTRSEALRAG 60
           M   GFTLIEL+VVLLI +L+LAAGVP L+  ++EQ+L    N FFH V L R++ALR  
Sbjct: 1   MDARGFTLIELMVVLLIVSLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLARAQALRHA 60

Query: 61  RRAEMRPVEDDDWQTGWQISVGQQVLARHPPLAHGIAVAYTSGGELVAYQANGQPVTRGT 120
           RRAEMRP +   W+ GWQI VGQ+VL R P L  GI+VA+T+GGE++ YQ NGQP+TRG+
Sbjct: 61  RRAEMRPSDGLHWERGWQIEVGQRVLRREPALPAGISVAHTAGGEVLGYQPNGQPLTRGS 120

Query: 121 WYFSGGTHARAVAINFLGRARICNPVTDGQCSKTQ 155
           W+FS    +R V INFLGRAR+CNP  + QCSK +
Sbjct: 121 WHFSSDGRSRVVVINFLGRARVCNPARETQCSKAE 155


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 464,815
Number of extensions: 18527
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)