BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3569.p
         (151 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312946|ref|YP_003777038.1| type-4 fimbrial pilin-related t...   196   6e-52

>gi|300312946|ref|YP_003777038.1| type-4 fimbrial pilin-related
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 160

 Score =  196 bits (498), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 116/149 (77%), Gaps = 6/149 (4%)

Query: 7   LSRAPARGFTLLEILVSLAIVILLAGLGWNGYRHVAQKASRAEGRAAILQVLLQQERHYA 66
           L R P  GFTL E++ +L +V++LAGL W+ Y+H   KA RAEGRAA+LQVLLQQER +A
Sbjct: 14  LHRQP--GFTLTELMAALLVVMVLAGLSWSSYQHAVLKARRAEGRAALLQVLLQQERQFA 71

Query: 67  YQHRYKAFQP--GV--EAHGFKWYSGATPQTSAYALSARACEGEDLSSCVLVSAAPGGTG 122
           YQ RY+AF+P  GV  E+  FKWYSG TPQTSAYALSARAC+G  L SCVLV+A PGG G
Sbjct: 72  YQQRYQAFEPAQGVPGESDDFKWYSGGTPQTSAYALSARACDGASLDSCVLVTATPGGPG 131

Query: 123 VNAGYQDEACGVLYADSRGARRADGKDCW 151
           V+AG+ D ACG L+ADSRG R ADG DCW
Sbjct: 132 VHAGFSDSACGRLHADSRGGRSADGPDCW 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 448,907
Number of extensions: 16419
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 74
Effective length of database: 1,255,275
Effective search space: 92890350
Effective search space used: 92890350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)