BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3568.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312945|ref|YP_003777037.1| Type IV pilus assembly protein ...   146   9e-37

>gi|300312945|ref|YP_003777037.1| Type IV pilus assembly protein
           [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score =  146 bits (369), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 100/155 (64%), Gaps = 5/155 (3%)

Query: 51  LAAQAALEDACEDILRHRRIEPEQFNSTLGCRTDAAGAGLCLGRNERSGWNPAQLHGPLA 110
           +AAQAAL+DAC D+ + R    +      GCR D AGAG CLGR  RS W  AQLHG  A
Sbjct: 1   MAAQAALDDACLDLRQGRAPSKDAAAPQAGCRHDPAGAGWCLGRAHRSTWQSAQLHGAQA 60

Query: 111 LSASYGQFTGRRFR--PGLEAPRYLIERLLPTVDKNKSYPDQPPTLRYRLNAIGYGRQGA 168
           +SA YGQFTGRRF   PG+  PRYLIE+L  T     +  D   T  YRLNAIGYGR GA
Sbjct: 61  ISAQYGQFTGRRFPALPGISPPRYLIEQL--TDGAAATGADDTTTALYRLNAIGYGRDGA 118

Query: 169 AVALQAVLQLPPQGQALPSACPLRAWRPLYLPVLE 203
            VALQA+++  P   A P++C   AWRPL+LP +E
Sbjct: 119 QVALQALVRH-PDPHAAPASCRTLAWRPLFLPDME 152


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 504,734
Number of extensions: 18295
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)