BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3567.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312944|ref|YP_003777036.1| Tfp pilus assembly transmembran...   389   e-109

>gi|300312944|ref|YP_003777036.1| Tfp pilus assembly transmembrane
           PilW protein [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  389 bits (998), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/289 (69%), Positives = 227/289 (78%), Gaps = 3/289 (1%)

Query: 15  RQAGLTLVELMIALAVGLLVVLVAGSLLQQARSAYQDIDDAGRVQETGRLALDHLQQALR 74
           RQAGLTLVELM+ALAVGLLVVL AG LLQQAR +Y+DIDDA RV ETGRL LDHLQQALR
Sbjct: 9   RQAGLTLVELMVALAVGLLVVLAAGVLLQQARESYEDIDDASRVNETGRLVLDHLQQALR 68

Query: 75  QAAHLPWETLDGKTAPTLTAGLRGLDDSGQAELLDPATGLFGNSTGDGVNHSDVLMLGLF 134
           QA HLPWE L  +  P L AGLRG+DDS QAEL DPATG FG STGDG++HSD+LMLGLF
Sbjct: 69  QAGHLPWEDL--RQPPALAAGLRGVDDSRQAELHDPATGQFGGSTGDGLHHSDLLMLGLF 126

Query: 135 GTPRGSLAQVGNCSGAEVAAGPLEESARSWVIYYIAPGTGDEAELRCRYQGKNGVWTSDA 194
           G    S AQVGNCSGA    GPLEESAR W+IYYIA G+  E ELRCRYQG++GVWTSDA
Sbjct: 127 GAAPASRAQVGNCSGAPAPTGPLEESARHWMIYYIAAGSSGEPELRCRYQGRHGVWTSDA 186

Query: 195 IARGVEAMQLRYAIDSDGDGAPDRWLDATAMPAAAWRQVVLVRIALLVRGSQRRPGANEI 254
           IARGVEAMQLRYAIDSD DGAPD+W DA+ M AA W QVVLV+IALLVRG ++RP  + +
Sbjct: 187 IARGVEAMQLRYAIDSDSDGAPDQWRDASDMSAAQWSQVVLVQIALLVRGERQRP-RDVV 245

Query: 255 APRSYDLFLPGRRSDAAWRVTETEGEQRRRAVFQGTVMLRNLVATGAAP 303
           +PR Y+L      +   W V    GE RRRAVF+ TV+LRNL + GA P
Sbjct: 246 SPRRYELLAAPPPTPPGWTVDAAPGEDRRRAVFRATVLLRNLRSPGAGP 294


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,036,791
Number of extensions: 46305
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)