BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3566.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312943|ref|YP_003777035.1| hypothetical protein Hsero_3649...   171   3e-44

>gi|300312943|ref|YP_003777035.1| hypothetical protein Hsero_3649
           [Herbaspirillum seropedicae SmR1]
          Length = 170

 Score =  171 bits (433), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 118/165 (71%), Gaps = 3/165 (1%)

Query: 7   GFSMIEVLVAILVIGTGALAMVMLQLHALRSSQDSGLHARATLMAQELAELRSAMPHPVG 66
           GFS+IEVLVA+LV+GTGALAMVMLQLHALRSS DS LHARATLMA ELAELR+A+    G
Sbjct: 9   GFSLIEVLVAMLVVGTGALAMVMLQLHALRSSHDSALHARATLMALELAELRAALAPAPG 68

Query: 67  TSDPFLFSLSPGKALPAQVDCELAACSPSDFTRAALADWTGRLVRDFPHARVTVCRDGRS 126
            +DP LF+   G+A  + + C    CS +DF  AA+ADW+ RLVR FP ARV VCRDG  
Sbjct: 69  MADPTLFAFDGGRAPGSHIACSNTPCSAADFASAAIADWSARLVRGFPGARVAVCRDGGQ 128

Query: 127 RTPEDWQCDDQGSAPVVLKLGWRRIGAATPSTVASAPLLTLVLGH 171
              + W CD   +APV+ +L WRR G A   + A+ P+LTL LGH
Sbjct: 129 TPQQSWSCDHTPAAPVIFRLSWRRPGTA---SAAALPMLTLALGH 170


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 566,325
Number of extensions: 23125
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)