BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3561.p
         (335 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesi...   545   e-156
gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesi...   187   1e-48

>gi|300312938|ref|YP_003777030.1| molybdenum cofactor biosynthesis
           enzyme A protein [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  545 bits (1404), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/329 (80%), Positives = 287/329 (87%), Gaps = 1/329 (0%)

Query: 8   TDRPA-LQDRFGRRISYVRLSVTDRCDLRCSYCMPKGFNGFEEPANWLSFDEISRVIGAF 66
           T  PA LQDRFGRRISY+R+SVTDRCDLRCSYC+PKG  GFEEP NWL FDEISRV+ AF
Sbjct: 5   THPPAVLQDRFGRRISYLRISVTDRCDLRCSYCLPKGHTGFEEPQNWLRFDEISRVVAAF 64

Query: 67  ARLGVGRVRLTGGEPLLRRHLPMLAAQLSALPGVEELSLSTNATQMHKHAQDLRAAGVTR 126
           ARLG GRVRLTGGEPLLRR L  LAAQLSALPGV+ELSLSTNATQ+HKHA  LRAAGV R
Sbjct: 65  ARLGAGRVRLTGGEPLLRRGLATLAAQLSALPGVDELSLSTNATQLHKHAASLRAAGVQR 124

Query: 127 INVSLDSLERACVTRITGRDSLGNVMAGLAAAKAAGFAPIKVNMVVLHGVNEAEIPRMAE 186
           INVSLDSL+RAC   ITGRDSL +VM+GL AAKAAGFAPIK+NMV+L GVNE E+P+MA+
Sbjct: 125 INVSLDSLDRACSASITGRDSLASVMSGLEAAKAAGFAPIKINMVLLRGVNEQEVPQMAQ 184

Query: 187 FCFEQGFILRLIEAMPMGETGRHSGTVDIGPIREQLVARFGLQPLAAELGGGPARYWQRA 246
           FCFE GFILRLIE MPMG TGR S  +++GP+RE LVARFGL+PLAAELGGGPARYW   
Sbjct: 185 FCFEHGFILRLIETMPMGATGRSSPALELGPLREALVARFGLRPLAAELGGGPARYWSTP 244

Query: 247 DGDGAIGFISPISQHFCATCNRVRVSVDGTLYLCLGQEARVELRPLLRAGIDDAGLEEAI 306
           DG   IGFISPISQHFCATCNRVR+SVDGTLYLCLGQE R ELRPLLRAGIDDAGLE AI
Sbjct: 245 DGRSTIGFISPISQHFCATCNRVRLSVDGTLYLCLGQEERFELRPLLRAGIDDAGLESAI 304

Query: 307 RLAIELKPERHEFQEQPHKIIRFMSQTGG 335
           R AIELKPERHEF E P KI+RFMSQTGG
Sbjct: 305 RAAIELKPERHEFNEAPQKIVRFMSQTGG 333


>gi|300311209|ref|YP_003775301.1| molybdenum cofactor biosynthesis
           protein A [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  187 bits (474), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 179/339 (52%), Gaps = 17/339 (5%)

Query: 13  LQDRFGRRISYVRLSVTDRCDLRCSYCMPKG-FNG---FEEPANWLSFDEISRVIGAFAR 68
           L D  GR +  +R+SVTDRC+ RC YCMPK  F+    F   ++ L+F+E++RV   F  
Sbjct: 56  LSDSLGRPLHDLRISVTDRCNFRCVYCMPKDVFDKQYQFLPHSDLLTFEELTRVAAQFVA 115

Query: 69  LGVGRVRLTGGEPLLRRHLPMLAAQLSALPGVEELSLSTNATQM----HKHAQDLRAAGV 124
            GV ++RLTGGEPLLR+++  L   L+AL   E+  +    T       + AQ L+ AG+
Sbjct: 116 HGVRKIRLTGGEPLLRKNIETLIGMLAALRTPEDEPVDLTLTTNGTLLKQKAQALKDAGL 175

Query: 125 TRINVSLDSLERACVTRITGRD-SLGNVMAGLAAAKAAGFAPIKVNMVVLHGVNEAEIPR 183
            R+ VSLDSL+     R+   D  +  V+ G+ AA AAG  P+K+NMVV  GVN+ +I  
Sbjct: 176 KRVTVSLDSLDDEGFRRMNDVDFPVARVLEGIDAAHAAGLGPVKINMVVKKGVNDDQILP 235

Query: 184 MAEFCFEQGFILRLIEAMPMGETG--RHSGTVDIGPIREQLVARFGLQPLAAELGGGPAR 241
           MA +      ILR IE M +G +   R    +    +   +     L+       G  A 
Sbjct: 236 MARYFKGTPAILRFIEYMDVGSSNGWRMDEVLPSAEVVRLIATEMPLEVADPNYTGETAE 295

Query: 242 YWQRADGDGAIGFISPISQHFCATCNRVRVSVDGTLYLCLGQEARVELRPLLRAGIDDAG 301
            W+  DG G IG IS ++Q FC  C+R R+S +G +Y CL      +LR ++R+G  DA 
Sbjct: 296 RWRYVDGSGEIGVISSVTQAFCQDCSRARLSTEGRVYTCLFASEGHDLRSIVRSGGSDAE 355

Query: 302 LEEAIRLAIELKPERHE-----FQEQPHKIIRFMSQTGG 335
           +  AI      + +R+       +E P + +  MS  GG
Sbjct: 356 IAGAIAALWGQRGDRYSELRSALREAPLRKVE-MSYIGG 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,006,934
Number of extensions: 40901
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,212,660
Effective search space: 301952340
Effective search space used: 301952340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)