BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3560.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl c...    58   7e-10
gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isome...    55   6e-09

>gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl
           cis-trans isomerase [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score = 57.8 bits (138), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 8/141 (5%)

Query: 97  VSHILFQVTEGVDLA-ALRLHAESVLAESLAQ-PQRFAELAVINSNCPSGAQGGSLGQIT 154
           V HIL +V + V  A A R   E  L E L      F ELA + SN  S ++GG LG + 
Sbjct: 355 VRHILIKVNQVVTAAEAKRKLTE--LKERLDHGSATFEELAKLYSNDLSASKGGDLGWVY 412

Query: 155 RGACVPEFEKAVFAAQAGAILPRLVESRFGLHIVQ-LGRKFDGQALPFEAVRENIAQALQ 213
            G  VPEFE+A+   + G +  + +E+ FG H++Q + RK D  +   E  R+   QA++
Sbjct: 413 PGDTVPEFERAMDQLKPGEV-SQPIETPFGYHLIQVVERKTDDASK--ERARQAARQAIR 469

Query: 214 RASFDRAVRQYLQLLVGRARI 234
               D A   +++ +  RA +
Sbjct: 470 ERKIDEATEDWMRQIRDRAYV 490


>gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans
           isomerase D [Herbaspirillum seropedicae SmR1]
          Length = 639

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 118 ESVLAESLAQPQRFAELAVINSNCPSGAQ-GGSLGQITRGACVPEFEKAVFAAQAGAILP 176
           E ++A+    P  FA+LA  NS  P  A+ GG LG   +GA V  FE A F+ + G I  
Sbjct: 294 EGLVAQLRKNPGEFAKLAKANSQDPGSAENGGDLGYFGKGAMVKPFEDAAFSLKQGEI-S 352

Query: 177 RLVESRFGLHIVQLGRKFDGQALPFEAVRENIAQALQR 214
             V+S FG HI+++         P E+V+  I   +++
Sbjct: 353 DPVQSDFGYHIIEVTGIKPAAVKPLESVKAEIGSEIKK 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 627,153
Number of extensions: 23559
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 3
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)